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    TMCC1-DT TMCC1 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 100507032, updated on 17-Sep-2024

    Summary

    Official Symbol
    TMCC1-DTprovided by HGNC
    Official Full Name
    TMCC1 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:49060
    See related
    Ensembl:ENSG00000271270 AllianceGenome:HGNC:49060
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TMCC1-AS1
    Expression
    Ubiquitous expression in brain (RPKM 1.3), prostate (RPKM 0.6) and 25 other tissues See more
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    Genomic context

    See TMCC1-DT in Genome Data Viewer
    Location:
    3q22.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (129893871..129908912)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (132638120..132653162)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (129612714..129627755)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene transmembrane and coiled-coil domain family 1 Neighboring gene uncharacterized LOC124906340 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:129550881-129551035 Neighboring gene RNY3 pseudogene 13 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:129611136-129611928 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:129611929-129612720 Neighboring gene MPRA-validated peak4828 silencer Neighboring gene MPRA-validated peak4829 silencer Neighboring gene collagen alpha-1(III) chain-like Neighboring gene ribosomal protein S17 pseudogene 9 Neighboring gene thyrotropin releasing hormone

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_037893.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL449209
      Related
      ENST00000605830.6

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      129893871..129908912
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      132638120..132653162
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)