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    CASC22 cancer susceptibility 22 [ Homo sapiens (human) ]

    Gene ID: 283854, updated on 17-Sep-2024

    Summary

    Official Symbol
    CASC22provided by HGNC
    Official Full Name
    cancer susceptibility 22provided by HGNC
    Primary source
    HGNC:HGNC:50627
    See related
    Ensembl:ENSG00000260887 AllianceGenome:HGNC:50627
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LINC01373; TCONS_00024290; LincRNA-ENST00000515084
    Expression
    Restricted expression toward testis (RPKM 1.5) See more
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    Genomic context

    See CASC22 in Genome Data Viewer
    Location:
    16q12.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (52258564..52280299)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (58056485..58078220)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (52292476..52314211)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 919 Neighboring gene long intergenic non-protein coding RNA 2180 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:52152392-52152892 Neighboring gene uncharacterized LOC105371261 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr16:52299165-52300032 Neighboring gene uncharacterized LOC107983961 Neighboring gene uncharacterized LOC107984901 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr16:52331523-52332722 Neighboring gene VISTA enhancer hs161 Neighboring gene uncharacterized LOC105371262

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Markers

    Other Names

    • cancer susceptibility 22 (non-protein coding)
    • cancer susceptibility candidate 22 (non-protein coding)
    • long intergenic non-protein coding RNA 1373

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_135281.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007333
      Related
      ENST00000569713.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      52258564..52280299
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      58056485..58078220
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)