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    LINC00700 long intergenic non-protein coding RNA 700 [ Homo sapiens (human) ]

    Gene ID: 282980, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC00700provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 700provided by HGNC
    Primary source
    HGNC:HGNC:27422
    See related
    AllianceGenome:HGNC:27422
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 1.9) See more
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    Genomic context

    See LINC00700 in Genome Data Viewer
    Location:
    10p15.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (2005473..2014348, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (2002915..2011790, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (2047667..2056542, complement)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376345 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:1789244-1790443 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:1816736-1817445 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:1980919-1982118 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:1984230-1985429 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:2008580-2009779 Neighboring gene uncharacterized LOC105376346 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:2112487-2112988 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:2112989-2113488 Neighboring gene microRNA 6072 Neighboring gene RNA, U6 small nuclear 889, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040253.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK097474, AL441943, KF455195

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      2005473..2014348 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      2002915..2011790 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)