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    TRPC5OS TRPC5 opposite strand [ Homo sapiens (human) ]

    Gene ID: 100329135, updated on 17-Sep-2024

    Summary

    Official Symbol
    TRPC5OSprovided by HGNC
    Official Full Name
    TRPC5 opposite strandprovided by HGNC
    Primary source
    HGNC:HGNC:40593
    See related
    Ensembl:ENSG00000204025 AllianceGenome:HGNC:40593
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TRPC5-AS1
    Expression
    Restricted expression toward testis (RPKM 13.8) See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See TRPC5OS in Genome Data Viewer
    Location:
    Xq23
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (111876051..111903990)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (110324392..110352330)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (111119279..111147218)

    Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:110924066-110924785 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29860 Neighboring gene RNA, 5S ribosomal pseudogene 512 Neighboring gene ALG13 UDP-N-acetylglucosaminyltransferase subunit Neighboring gene transient receptor potential cation channel subfamily C member 5 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20944 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:111155775-111156274 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29861 Neighboring gene retrotransposon Gag like 4 Neighboring gene divergent-paired related homeobox pseudogene 7 Neighboring gene CCDC121 pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    putative uncharacterized protein TRPC5OS
    Names
    TRPC5 antisense RNA 1 (non-protein coding)
    TRPC5 opposite strand protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001195576.1NP_001182505.1  putative uncharacterized protein TRPC5OS

      See identical proteins and their annotated locations for NP_001182505.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript. Variants 1, 2 and 3 encode the same protein.
      Source sequence(s)
      BC034811, BF510645, DB076612, DB096871
      Consensus CDS
      CCDS83485.1
      UniProtKB/Swiss-Prot
      A6NMA1
      Related
      ENSP00000490633.1, ENST00000612026.5
    2. NM_001195577.2NP_001182506.1  putative uncharacterized protein TRPC5OS

      See identical proteins and their annotated locations for NP_001182506.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 3 encode the same protein.
      Source sequence(s)
      BC034811, BF510645
      Consensus CDS
      CCDS83485.1
      UniProtKB/Swiss-Prot
      A6NMA1
      Related
      ENSP00000490135.1, ENST00000371970.2
    3. NM_001195578.2NP_001182507.1  putative uncharacterized protein TRPC5OS

      See identical proteins and their annotated locations for NP_001182507.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 3 encode the same protein.
      Source sequence(s)
      AC005191, BC034811, BF510645, DB458957
      Consensus CDS
      CCDS83485.1
      UniProtKB/Swiss-Prot
      A6NMA1
      Related
      ENSP00000490533.1, ENST00000635763.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

      Range
      111876051..111903990
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060947.1 Alternate T2T-CHM13v2.0

      Range
      110324392..110352330
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)