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    PRSS40A serine protease 40A (pseudogene) [ Homo sapiens (human) ]

    Gene ID: 150527, updated on 10-Dec-2024

    Summary

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    Official Symbol
    PRSS40Aprovided by HGNC
    Official Full Name
    serine protease 40A (pseudogene)provided by HGNC
    Primary source
    HGNC:HGNC:37319
    See related
    Ensembl:ENSG00000290614 AllianceGenome:HGNC:37319
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TISP43
    Expression
    Restricted expression toward testis (RPKM 2.3) See more
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    Genomic context

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    See PRSS40A in Genome Data Viewer
    Location:
    2q21.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (130570846..130584161)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (131004760..131018072)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (131328419..131341734)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene cryptic, EGF-CFC family member 1B Neighboring gene serine protease 40B (pseudogene) Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:131320684-131321250 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:131321251-131321816 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:131326595-131327096 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:131333984-131334654 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:131340236-131340736 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:131350757-131351257 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:131355418-131355918 Neighboring gene cryptic, EGF-CFC family member 1 Neighboring gene POTE ankyrin domain family member J Neighboring gene RNA, U6 small nuclear 848, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027313.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      BC064385
      Related
      ENST00000419965.1

    2. NR_027314.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate exon, compared to variant 1
      Source sequence(s)
      BC037249, BC064385

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      130570846..130584161
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      131004760..131018072
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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