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    LOC100132004 ankyrin repeat domain 30B pseudogene [ Homo sapiens (human) ]

    Gene ID: 100132004, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC100132004
    Gene description
    ankyrin repeat domain 30B pseudogene
    See related
    Ensembl:ENSG00000307235
    Gene type
    pseudo
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 4.5) See more
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    Genomic context

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    See LOC100132004 in Genome Data Viewer
    Location:
    9p11.2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (40754862..40768285, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (42529805..42543229)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene immunoglobulin kappa variable 1/OR9-2 (pseudogene) Neighboring gene vomeronasal 1 receptor 49 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28422 Neighboring gene RNA, U6 small nuclear 156, pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr9:66768055-66768556 Neighboring gene NANOG hESC enhancer GRCh37_chr9:66784324-66784825 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:66809156-66809719 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:66818900-66819484 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:66823139-66823953 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:66832750-66833586 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:66833587-66834422 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:66834423-66835258 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:66843600-66844341 Neighboring gene NANOG hESC enhancer GRCh37_chr9:66854522-66855023 Neighboring gene MPRA-validated peak7256 silencer Neighboring gene uncharacterized LOC107986997 Neighboring gene microRNA 1299 Neighboring gene NANOG hESC enhancer GRCh37_chr9:68695497-68695998 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:69048303-69048804 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:68712489-68713157 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr9:68725219-68725948

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    General gene information

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    Other Names

    • putative ankyrin repeat domain-containing protein 30B-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      40754862..40768285 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007061504.1 RNA Sequence

      Related
      ENST00000824653.1

    2. XR_007061505.1 RNA Sequence

      Related
      ENST00000824652.1

    3. XR_001746457.2 RNA Sequence

      Related
      ENST00000824657.1

    4. XR_001746458.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      42529805..42543229
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_008488144.1 RNA Sequence

    2. XR_008488145.1 RNA Sequence

    3. XR_008488143.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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