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    zgc:86738 zgc:86738 [ Danio rerio (zebrafish) ]

    Gene ID: 415231, updated on 2-Nov-2024

    Summary

    Official Symbol
    zgc:86738provided by ZNC
    Official Full Name
    zgc:86738provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040625-151
    See related
    Ensembl:ENSDARG00000102207 AllianceGenome:ZFIN:ZDB-GENE-040625-151
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to be located in membrane. Is expressed in yolk syncytial layer. [provided by Alliance of Genome Resources, Nov 2024]
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    NEW
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    Genomic context

    See zgc:86738 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) Unplaced Scaffold NW_008805358.1 (1..3873, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) Unplaced Scaffold NW_008805358.1 (1..3873, complement)

    NW_008805358.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    Transmembrane protein 150A-like

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001002141.1NP_001002141.1  Transmembrane protein 150A-like

      See identical proteins and their annotated locations for NP_001002141.1

      Status: PROVISIONAL

      Source sequence(s)
      BC071413
      UniProtKB/TrEMBL
      Q6IQJ3
      Related
      ENSDARP00000134371.2, ENSDART00000170366.2
      Conserved Domains (1) summary
      pfam10277
      Location:4232
      Frag1; Frag1/DRAM/Sfk1 family

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NW_008805358.1 Reference GRCz11 Primary Assembly

      Range
      1..3873 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)