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    LOC100151335 PI-PLC X domain-containing protein 1 [ Danio rerio (zebrafish) ]

    Gene ID: 100151335, updated on 12-Sep-2024

    Summary

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    Gene symbol
    LOC100151335
    Gene description
    PI-PLC X domain-containing protein 1
    See related
    Ensembl:ENSDARG00000071139
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Orthologs
    all
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    Genomic context

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    See LOC100151335 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (9142598..9150371)
    105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (8906904..8914837)

    Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene VPS16 core subunit of CORVET and HOPS complexes Neighboring gene regucalcin Neighboring gene zgc:64065 Neighboring gene zgc:112023

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    PI-PLC X domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007117.7 Reference GRCz11 Primary Assembly

      Range
      9142598..9150371
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001923441.8 → XP_001923476.1  PI-PLC X domain-containing protein 1

      UniProtKB/TrEMBL
      A0A8M1QHW4, E7FCY6
      Related
      ENSDARP00000125876.1, ENSDART00000151615.2
      Conserved Domains (1) summary
      cd08616
      Location:14 → 298
      PI-PLCXD1c; Catalytic domain of phosphatidylinositol-specific phospholipase C, X domain containing 1

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395249.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      323825..331729
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021474054.2 → XP_021329729.1  PI-PLC X domain-containing protein 1

      UniProtKB/TrEMBL
      A0A8M9PXW8
      Conserved Domains (1) summary
      cd08616
      Location:14 → 298
      PI-PLCXD1c; Catalytic domain of phosphatidylinositol-specific phospholipase C, X domain containing 1
    Nucleotide Protein
    Heading Accession and Version

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