si:ch211-119o8.6 si:ch211-119o8.6 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: si:ch211-119o8.6provided by ZNC
Official Full Name: si:ch211-119o8.6provided by ZNC
Primary source: ZFIN:ZDB-GENE-070912-17
See related: Ensembl:ENSDARG00000026972 AllianceGenome:ZFIN:ZDB-GENE-070912-17
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: wu:fd19e01
Summary: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within DNA recombination. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: all
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Genomic context

See si:ch211-119o8.6 in Genome Data Viewer

Location:: chromosome: 2

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	2	NC_007113.7 (38985104..38992320, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	2	NC_007113.6 (39019469..39026681, complement)

Chromosome 2 - NC_007113.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific	IBA Inferred from Biological aspect of Ancestor more info
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within DNA recombination	IEA Inferred from Electronic Annotation more info
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: uncharacterized protein LOC556659

Names: zinc finger protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001114740.1 → NP_001108212.1 uncharacterized protein LOC556659

See identical proteins and their annotated locations for NP_001108212.1

Status: PREDICTED

Source sequence(s)

BC155293

UniProtKB/TrEMBL

A9JTD1

Related

ENSDARP00000097616.2, ENSDART00000114085.4

Conserved Domains (4) summary

COG5048
Location:201 → 587

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:233 → 253

ZF_C2H2; C2H2 Zn finger [structural motif]

sd00019
Location:205 → 225

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam13465
Location:273 → 298

zf-H2C2_2; Zinc-finger double domain