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    igsf9b immunoglobulin superfamily, member 9b [ Danio rerio (zebrafish) ]

    Gene ID: 553348, updated on 2-Nov-2024

    Summary

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    Official Symbol
    igsf9bprovided by ZNC
    Official Full Name
    immunoglobulin superfamily, member 9bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060810-28
    See related
    Ensembl:ENSDARG00000010408 AllianceGenome:ZFIN:ZDB-GENE-060810-28
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    igsf9l; im:7138430; im:7148508; si:dkey-49h9.6
    Summary
    Predicted to be involved in cell-cell adhesion. Is expressed in nervous system; optic vesicle; otic vesicle; and somite. Orthologous to human IGSF9 (immunoglobulin superfamily member 9). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See igsf9b in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (4853957..4960246, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (4799189..4903785, complement)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene coiled-coil domain-containing protein 74A Neighboring gene glutamine amidotransferase class 1 domain containing 3, like Neighboring gene transmembrane protein 230b Neighboring gene adrenoceptor alpha 1Aa

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    immunoglobulin superfamily, member 9b; uncharacterized protein igsf9b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      4853957..4960246 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068223093.1 → XP_068079194.1  uncharacterized protein igsf9b isoform X2

    2. XM_681113.10 → XP_686205.6  uncharacterized protein igsf9b isoform X1

      UniProtKB/TrEMBL
      A0A8N7TDD3
      Related
      ENSDARP00000110531.2, ENSDART00000126808.3
      Conserved Domains (5) summary
      cd00096
      Location:345 → 411
      Ig; Immunoglobulin domain
      smart00408
      Location:156 → 217
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:148 → 227
      IG_like; Immunoglobulin like
      cd00063
      Location:512 → 603
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cl11960
      Location:237 → 323
      Ig; Immunoglobulin domain
    Nucleotide Protein Strain
    Heading Accession and Version

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