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    zgc:101858 zgc:101858 [ Danio rerio (zebrafish) ]

    Gene ID: 449555, updated on 2-Nov-2024

    Summary

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    Official Symbol
    zgc:101858provided by ZNC
    Official Full Name
    zgc:101858provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040927-13
    See related
    Ensembl:ENSDARG00000035129 AllianceGenome:ZFIN:ZDB-GENE-040927-13
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable oxidoreductase activity. Is expressed in several structures, including alar plate midbrain region; eye; immature eye; midbrain; and pectoral fin. [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See zgc:101858 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (64856873..64861295)
    105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (64175502..64180131)

    Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137495656 Neighboring gene leucine rich repeat containing 8 VRAC subunit Ab Neighboring gene peptidylprolyl isomerase (cyclophilin)-like 3 Neighboring gene zinc finger and BTB domain containing 26 Neighboring gene keratin, type 1, gene c5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Gene expression markers in the zebrafish embryo reflect a hepatotoxic response in animal models and humans. Driessen M, et al. Toxicol Lett, 2014 Oct 1. PMID 25064622
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC449555

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001005597.1 → NP_001005597.1  uncharacterized protein LOC449555

      See identical proteins and their annotated locations for NP_001005597.1

      Status: PREDICTED

      Source sequence(s)
      BC081417
      UniProtKB/TrEMBL
      Q642M8
      Related
      ENSDARP00000050862.3, ENSDART00000050863.4
      Conserved Domains (2) summary
      cd05364
      Location:12 → 262
      SDR_c11; classical (c) SDR, subgroup 11
      PRK05653
      Location:11 → 260
      fabG; 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007116.7 Reference GRCz11 Primary Assembly

      Range
      64856873..64861295
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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