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    zgc:193505 zgc:193505 [ Danio rerio (zebrafish) ]

    Gene ID: 559113, updated on 12-Sep-2024

    Summary

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    Official Symbol
    zgc:193505provided by ZNC
    Official Full Name
    zgc:193505provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-7103
    See related
    Ensembl:ENSDARG00000093584 AllianceGenome:ZFIN:ZDB-GENE-030131-7103
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fk82c03; wu:fk82c03
    Orthologs
    all
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    Genomic context

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    See zgc:193505 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (22675785..22678490)
    105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (22545335..22548040)

    Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene bone morphogenetic protein receptor, type IAa Neighboring gene multimerin 2a Neighboring gene synuclein, gamma a Neighboring gene glutamate dehydrogenase 1a Neighboring gene shieldin complex subunit 2 Neighboring gene nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Genome-wide identification, characterization, and expression analysis of lineage-specific genes within zebrafish. Yang L, et al. BMC Genomics, 2013 Jan 31. PMID 23368736, Free PMC Article
    2. Interferon regulatory factor 6 promotes differentiation of the periderm by activating expression of Grainyhead-like 3. de la Garza G, et al. J Invest Dermatol, 2013 Jan. PMID 22931925, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC559113

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001128697.3 → NP_001122169.2  uncharacterized protein LOC559113

      Status: VALIDATED

      Source sequence(s)
      EH437564, EH438100, EH600003
      UniProtKB/TrEMBL
      A0A8M1NHU3, B8A4A8
      Related
      ENSDARP00000114252.1, ENSDART00000145538.2

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007124.7 Reference GRCz11 Primary Assembly

      Range
      22675785..22678490
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394884.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      119239..121944
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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