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    eloa elongin A [ Danio rerio (zebrafish) ]

    Gene ID: 406764, updated on 2-Nov-2024

    Summary

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    Official Symbol
    eloaprovided by ZNC
    Official Full Name
    elongin Aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-2810
    See related
    Ensembl:ENSDARG00000102365 AllianceGenome:ZFIN:ZDB-GENE-040426-2810
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    tceb3; fc15a12; zgc:55573; wu:fa07b06; wu:fc15a12
    Summary
    Predicted to act upstream of or within transcription elongation by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of elongin complex. Orthologous to human ELOA (elongin A). [provided by Alliance of Genome Resources, Nov 2024]
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    human mouse all
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    Genomic context

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    See eloa in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (43822971..43833995)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (44227124..44238148)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene ribosomal protein L11 Neighboring gene kelch-like family member 43 Neighboring gene uncharacterized LOC101882448 Neighboring gene uncharacterized LOC108180087

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of elongin complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    elongin-A
    Names
    transcription elongation factor B (SIII), polypeptide 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_213455.1 → NP_998620.1  elongin-A

      See identical proteins and their annotated locations for NP_998620.1

      Status: PROVISIONAL

      Source sequence(s)
      BC044429
      UniProtKB/TrEMBL
      Q803L4
      Related
      ENSDARP00000130365.1, ENSDART00000171041.2
      Conserved Domains (2) summary
      cd00183
      Location:2 → 75
      TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
      pfam06881
      Location:418 → 516
      Elongin_A; RNA polymerase II transcription factor SIII (Elongin) subunit A

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      43822971..43833995
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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