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    si:ch73-55i23.1 si:ch73-55i23.1 [ Danio rerio (zebrafish) ]

    Gene ID: 100148818, updated on 14-Nov-2024

    Summary

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    Official Symbol
    si:ch73-55i23.1provided by ZNC
    Official Full Name
    si:ch73-55i23.1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-140106-38
    See related
    Ensembl:ENSDARG00000042090 AllianceGenome:ZFIN:ZDB-GENE-140106-38
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zmp:0000001078
    Summary
    Predicted to enable phospholipase activity. Predicted to act upstream of or within phospholipid catabolic process. Orthologous to human PLA2G4C (phospholipase A2 group IVC). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See si:ch73-55i23.1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (1911811..1924217)
    105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (1646489..1658892)

    Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene microRNA 101b Neighboring gene RNA terminal phosphate cyclase-like 1 Neighboring gene zgc:101699 Neighboring gene uncharacterized LOC110439839 Neighboring gene phospholipase A2, group IVC (cytosolic, calcium-independent), like 1 Neighboring gene ribosomal protein, large, P0

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables calcium ion binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables calcium-dependent phospholipase A2 activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables calcium-dependent phospholipid binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phospholipase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in glycerophospholipid catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within lipid catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within phospholipid catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nuclear envelope IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC100148818
    Names
    phospholipase A2, group IVC (cytosolic, calcium-independent)-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001204308.2 → NP_001191237.2  uncharacterized protein LOC100148818

      Status: VALIDATED

      Source sequence(s)
      CU929196
      UniProtKB/TrEMBL
      A0A0R4IGS2, A0A8M1P1U7
      Related
      ENSDARP00000134695.1, ENSDART00000172233.3
      Conserved Domains (1) summary
      cl11396
      Location:9 → 547
      Patatin_and_cPLA2; Patatins and Phospholipases

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007116.7 Reference GRCz11 Primary Assembly

      Range
      1911811..1924217
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068221055.1 → XP_068077156.1  uncharacterized protein LOC100148818 isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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    Research Materials