zgc:113142 zgc:113142 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zgc:113142provided by ZNC
Official Full Name: zgc:113142provided by ZNC
Primary source: ZFIN:ZDB-GENE-050220-2
See related: Ensembl:ENSDARG00000038969 AllianceGenome:ZFIN:ZDB-GENE-050220-2
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fd58d01; wu:fd58d01
Summary: Predicted to enable oxidoreductase activity. Predicted to be involved in steroid metabolic process. Predicted to be active in intracellular membrane-bounded organelle. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 17

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	17	NC_007128.7 (51627209..51638206)
105	previous assembly	GRCz10 (GCF_000002035.5)	17	NC_007128.6 (51538174..51549171)

Chromosome 17 - NC_007128.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables oxidoreductase activity	IBA Inferred from Biological aspect of Ancestor more info
enables oxidoreductase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in steroid metabolic process	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in intracellular membrane-bounded organelle	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: uncharacterized protein LOC503524

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001012488.1 → NP_001012506.1 uncharacterized protein LOC503524 precursor

See identical proteins and their annotated locations for NP_001012506.1

Status: PREDICTED

Source sequence(s)

BC090181

UniProtKB/TrEMBL

Q5EB01

Related

ENSDARP00000056885.2, ENSDART00000056886.4

Conserved Domains (2) summary

pfam00106
Location:52 → 246

adh_short; short chain dehydrogenase

cl21454
Location:52 → 328

NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins