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    mypn myopalladin [ Danio rerio (zebrafish) ]

    Gene ID: 571695, updated on 2-Nov-2024

    Summary

    Official Symbol
    mypnprovided by ZNC
    Official Full Name
    myopalladinprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-100721-5
    See related
    AllianceGenome:ZFIN:ZDB-GENE-100721-5
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    wu:fc17a02
    Summary
    Is expressed in heart. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 1KK and nemaline myopathy 11. Orthologous to human MYPN (myopalladin). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
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    Genomic context

    See mypn in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (50253629..50321910, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (49944741..50008624, complement)

    Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 137Ba Neighboring gene eukaryotic translation initiation factor 2-alpha kinase 2 Neighboring gene G patch domain containing 11 Neighboring gene CDK2 associated cullin domain 1 Neighboring gene sirtuin 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001365297.1NP_001352226.1  myopalladin isoform 1

      Status: VALIDATED

      Source sequence(s)
      CU928131, CU929278
      UniProtKB/TrEMBL
      A0A8N7UTI8
      Conserved Domains (4) summary
      pfam07679
      Location:236322
      I-set; Immunoglobulin I-set domain
      cl11960
      Location:17751849
      Ig; Immunoglobulin domain
      cl26464
      Location:9981456
      Atrophin-1; Atrophin-1 family
      cl26557
      Location:375545
      RNase_E_G; Ribonuclease E/G family
    2. NM_001365298.1NP_001352227.1  myopalladin isoform 2

      Status: VALIDATED

      Source sequence(s)
      CU928131, CU929278
      UniProtKB/TrEMBL
      A0A8M9QNY4
      Conserved Domains (4) summary
      pfam07679
      Location:236322
      I-set; Immunoglobulin I-set domain
      cl11960
      Location:17481822
      Ig; Immunoglobulin domain
      cl26464
      Location:9981456
      Atrophin-1; Atrophin-1 family
      cl26557
      Location:375545
      RNase_E_G; Ribonuclease E/G family

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007124.7 Reference GRCz11 Primary Assembly

      Range
      50253629..50321910 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068212922.1XP_068069023.1  myopalladin isoform X1