hmgn1a high mobility group nucleosome binding domain 1a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: hmgn1aprovided by ZNC
Official Full Name: high mobility group nucleosome binding domain 1aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-131120-172
See related: Ensembl:ENSDARG00000097102 AllianceGenome:ZFIN:ZDB-GENE-131120-172
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: linc-wrb; wu:fa95c02; wu:fb74d02; si:ch73-281n10.2
Summary: Predicted to enable chromatin binding activity. Predicted to be involved in chromatin organization. Predicted to be located in chromatin. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 15

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	15	NC_007126.7 (5898410..5901542, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	15	NC_007126.6 (5910559..5913686, complement)

Chromosome 15 - NC_007126.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fc43h02.x1 (e-PCR)
- UniSTS:188173

fb98c06.x1 (e-PCR)
- UniSTS:203610

AI545364 (e-PCR)
- UniSTS:206285

fk69a05.x1 (e-PCR)
- UniSTS:201422

fk70b08.x1 (e-PCR)
- UniSTS:201439

AI330457 (e-PCR)
- UniSTS:206831

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables chromatin binding	IBA Inferred from Biological aspect of Ancestor more info
enables nucleosomal DNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in chromatin organization	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in chromatin	IEA Inferred from Electronic Annotation more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: Non-histone chromosomal protein HMG-14A-like

Names: non-histone chromosomal protein HMG-17

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001309644.1 → NP_001296573.1 Non-histone chromosomal protein HMG-14A-like

Status: VALIDATED

Source sequence(s)

CT573306, EH450941, EH463221, EH523724, EH557609

UniProtKB/TrEMBL

A0A0R4IWN8, A0A8M1P7Q0

Related

ENSDARP00000139237.1, ENSDART00000155252.3

Conserved Domains (1) summary

smart00527
Location:2 → 80

HMG17; domain in high mobilty group proteins HMG14 and HMG 17