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    tax1bp1b Tax1 (human T-cell leukemia virus type I) binding protein 1b [ Danio rerio (zebrafish) ]

    Gene ID: 324152, updated on 2-Nov-2024

    Summary

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    Official Symbol
    tax1bp1bprovided by ZNC
    Official Full Name
    Tax1 (human T-cell leukemia virus type I) binding protein 1bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-2872
    See related
    Ensembl:ENSDARG00000056856 AllianceGenome:ZFIN:ZDB-GENE-030131-2872
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    tax1bp1; zgc:73219; zgc:77129; wu:fc20c12; wu:fc56e11
    Summary
    Predicted to enable metal ion binding activity. Predicted to act upstream of or within apoptotic process. Is expressed in mesenchyme pectoral fin. Orthologous to human TAX1BP1 (Tax1 binding protein 1). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See tax1bp1b in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (20805933..20870205, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (21000114..21064386, complement)

    Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene cAMP responsive element binding protein 5b Neighboring gene uncharacterized LOC110437981 Neighboring gene JAZF zinc finger 1b Neighboring gene uncharacterized LOC137487897 Neighboring gene 3-hydroxyisobutyrate dehydrogenase b Neighboring gene homeobox A13b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Tri-phasic expression of posterior Hox genes during development of pectoral fins in zebrafish: implications for the evolution of vertebrate paired appendages. Ahn D, et al. Dev Biol, 2008 Oct 1. PMID 18638469
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    tax1-binding protein 1 homolog B
    Names
    Tax1 (human T-cell leukemia virus type I) binding protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001430974.1 → NP_001417903.1  tax1-binding protein 1 homolog B isoform 2

      Status: VALIDATED

      Source sequence(s)
      CR392024
      Related
      ENSDARP00000137903.2, ENSDART00000169541.2

    2. NM_212664.2 → NP_997829.2  tax1-binding protein 1 homolog B isoform 1

      Status: VALIDATED

      Source sequence(s)
      CR392024
      UniProtKB/Swiss-Prot
      Q6P132, Q6P958
      UniProtKB/TrEMBL
      A0A8M9PM76
      Related
      ENSDARP00000040726.6, ENSDART00000040727.8

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007127.7 Reference GRCz11 Primary Assembly

      Range
      20805933..20870205 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068213891.1 → XP_068069992.1  tax1-binding protein 1 homolog B isoform X3

    2. XM_005157957.4 → XP_005158014.1  tax1-binding protein 1 homolog B isoform X2

      UniProtKB/TrEMBL
      A0A8M2B4U0
      Conserved Domains (4) summary
      COG1340
      Location:160 → 476
      COG1340; Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]
      COG5281
      Location:342 → 646
      COG5281; Phage-related minor tail protein [Mobilome: prophages, transposons]
      TIGR02101
      Location:247 → 441
      IpaC_SipC; type III secretion target, IpaC/SipC family
      pfam15233
      Location:156 → 268
      SYCE1; Synaptonemal complex central element protein 1

    3. XM_021466620.2 → XP_021322295.1  tax1-binding protein 1 homolog B isoform X1

      UniProtKB/Swiss-Prot
      Q6P132, Q6P958
      UniProtKB/TrEMBL
      A0A8M9PM76
      Conserved Domains (2) summary
      cl25732
      Location:22 → 714
      SMC_N; RecF/RecN/SMC N terminal domain
      cl27210
      Location:249 → 344
      Mnd1; Mnd1 family
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6P132.3 GenPept UniProtKB/Swiss-Prot:Q6P132

    Gene LinkOut

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