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    ccdc117 coiled-coil domain containing 117 [ Danio rerio (zebrafish) ]

    Gene ID: 566053, updated on 2-Nov-2024

    Summary

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    Official Symbol
    ccdc117provided by ZNC
    Official Full Name
    coiled-coil domain containing 117provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-1001
    See related
    Ensembl:ENSDARG00000091872 AllianceGenome:ZFIN:ZDB-GENE-030131-1001
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb55e05; wu:fb55e05; si:ch211-102c2.7
    Summary
    Orthologous to human CCDC117 (coiled-coil domain containing 117). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See ccdc117 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (26786969..26795448, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (26186816..26195295, complement)

    Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene si:ch211-102c2.8 Neighboring gene ring finger protein 181 Neighboring gene transcobalamin II Neighboring gene RAB, member RAS oncogene family-like 6b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 117

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001123279.2 → NP_001116751.1  coiled-coil domain-containing protein 117

      Status: VALIDATED

      Source sequence(s)
      CU041374, EH445898
      UniProtKB/TrEMBL
      A0A8M1NG58, F2Z4X0
      Related
      ENSDARP00000121330.1, ENSDART00000146124.2
      Conserved Domains (1) summary
      pfam15810
      Location:141 → 268
      CCDC117; Coiled-coil domain-containing protein 117

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007116.7 Reference GRCz11 Primary Assembly

      Range
      26786969..26795448 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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