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    si:ch211-140m22.7 si:ch211-140m22.7 [ Danio rerio (zebrafish) ]

    Gene ID: 570370, updated on 14-Nov-2024

    Summary

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    Official Symbol
    si:ch211-140m22.7provided by ZNC
    Official Full Name
    si:ch211-140m22.7provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070912-73
    See related
    Ensembl:ENSDARG00000077967 AllianceGenome:ZFIN:ZDB-GENE-070912-73
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable proton transmembrane transporter activity. Predicted to act upstream of or within proton motive force-driven ATP synthesis. Predicted to be part of proton-transporting ATP synthase complex. Orthologous to human ATP5PF (ATP synthase peripheral stalk subunit F6). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See si:ch211-140m22.7 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (19489514..19510931)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (19678645..19700065)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 37 member 1 Neighboring gene phosphodiesterase 9aa Neighboring gene WD repeat domain 4 Neighboring gene NADH:ubiquinone oxidoreductase subunit V3 Neighboring gene pbx/knotted 1 homeobox 1.1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables proton transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within proton motive force-driven ATP synthesis IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC570370
    Names
    ATP synthase coupling factor 6, mitochondrial-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001256697.2 → NP_001243626.1  uncharacterized protein LOC570370 isoform 2

      See identical proteins and their annotated locations for NP_001243626.1

      Status: PREDICTED

      Description
      Transcript Variant: This variant (2) lacks an alternate in-frame exon compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
      Source sequence(s)
      BX294175, FP017279
      UniProtKB/TrEMBL
      A0A8M1P4K7, E7F2K4
      Related
      ENSDARP00000104105.3, ENSDART00000114256.4
      Conserved Domains (1) summary
      pfam05511
      Location:52 → 112
      ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6

    2. NM_001328145.1 → NP_001315074.1  uncharacterized protein LOC570370 isoform 1

      Status: PREDICTED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1).
      Source sequence(s)
      BX294175, FP017279
      UniProtKB/TrEMBL
      A0A2R8RW11, A0A8M1P3K6
      Related
      ENSDARP00000154204.1, ENSDART00000190572.1
      Conserved Domains (1) summary
      pfam05511
      Location:392 → 452
      ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6

    RNA

    1. NR_137292.1 RNA Sequence

      Status: PREDICTED

      Description
      Transcript Variant: This variant (3) lacks two alternate exons compared to variant 1. This variant is represented as non-coding because the predicted protein does not meet RefSeq quality criteria.
      Source sequence(s)
      BX294175, FP017279
      Related
      ENSDART00000151918.3

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      19489514..19510931
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009304638.4 → XP_009302913.1  uncharacterized protein LOC570370 isoform X1

      UniProtKB/TrEMBL
      A0A8M3B5K9
      Conserved Domains (1) summary
      pfam05511
      Location:414 → 474
      ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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