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    ifi35 interferon-induced protein 35 [ Danio rerio (zebrafish) ]

    Gene ID: 559610, updated on 2-Nov-2024

    Summary

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    Official Symbol
    ifi35provided by ZNC
    Official Full Name
    interferon-induced protein 35provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-100311-2
    See related
    Ensembl:ENSDARG00000075643 AllianceGenome:ZFIN:ZDB-GENE-100311-2
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to be active in nucleus. Orthologous to human IFI35 (interferon induced protein 35). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See ifi35 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (29934804..29948955)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (29810950..29818113)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene RUN domain containing 1 Neighboring gene granulin a antisense Neighboring gene granulin a Neighboring gene branched chain amino-acid transaminase 2, mitochondrial Neighboring gene hydroxysteroid (17-beta) dehydrogenase 14

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Sample Preparation and Analysis of RNASeq-based Gene Expression Data from Zebrafish. Hostelley TL, et al. J Vis Exp, 2017 Oct 27. PMID 29155729, Free PMC Article
    2. Contrasted innate responses to two viruses in zebrafish: insights into the ancestral repertoire of vertebrate IFN-stimulated genes. Briolat V, et al. J Immunol, 2014 May 1. PMID 24683187
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    interferon-induced 35 kDa protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001386657.1 → NP_001373586.1  interferon-induced 35 kDa protein

      Status: VALIDATED

      Source sequence(s)
      CR384107
      Related
      ENSDARP00000101080.3, ENSDART00000113889.5
      Conserved Domains (4) summary
      COG1842
      Location:17 → 118
      PspA; Phage shock protein A [Transcription, Signal transduction mechanisms]
      pfam07292
      Location:259 → 345
      NID; Nmi/IFP 35 domain (NID)
      cd12545
      Location:212 → 290
      RRM_IN35; RNA recognition motif in interferon-induced 35 kDa protein (IFP 35) and similar proteins
      cl17169
      Location:135 → 176
      RRM_SF; RNA recognition motif (RRM) superfamily

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      29934804..29948955
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068217208.1 → XP_068073309.1  interferon-induced 35 kDa protein isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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