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    zgc:165539 zgc:165539 [ Danio rerio (zebrafish) ]

    Gene ID: 564373, updated on 12-Sep-2024

    Summary

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    Official Symbol
    zgc:165539provided by ZNC
    Official Full Name
    zgc:165539provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-5478
    See related
    Ensembl:ENSDARG00000027639 AllianceGenome:ZFIN:ZDB-GENE-030131-5478
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fd19g12; wu:fd19g12
    Orthologs
    all
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    Genomic context

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    See zgc:165539 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (21541925..21545091, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (21584544..21587710, complement)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene protocadherin-10 Neighboring gene protocadherin alpha-C2 Neighboring gene protocadherin alpha-2-like Neighboring gene protocadherin 1 alpha 3 Neighboring gene uncharacterized LOC137496582 Neighboring gene protocadherin 1 alpha 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. rnaset2 mutant zebrafish model familial cystic leukoencephalopathy and reveal a role for RNase T2 in degrading ribosomal RNA. Haud N, et al. Proc Natl Acad Sci U S A, 2011 Jan 18. PMID 21199949, Free PMC Article
    2. Molecular Toxicity of Metal Oxide Nanoparticles in Danio rerio. Hou J, et al. Environ Sci Technol, 2018 Jul 17. PMID 29944347
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC564373

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001111176.1 → NP_001104646.1  uncharacterized protein LOC564373

      See identical proteins and their annotated locations for NP_001104646.1

      Status: PREDICTED

      Source sequence(s)
      BC153877
      UniProtKB/TrEMBL
      A8KAX7
      Conserved Domains (1) summary
      pfam03154
      Location:97 → 460
      Atrophin-1; Atrophin-1 family

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      21541925..21545091 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068223810.1 → XP_068079911.1  uncharacterized protein LOC564373 isoform X2

      Related
      ENSDARP00000116942.1, ENSDART00000132207.2

    2. XM_068223809.1 → XP_068079910.1  uncharacterized protein LOC564373 isoform X1

    Nucleotide Protein
    Heading Accession and Version

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