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    prr36a proline rich 36a [ Danio rerio (zebrafish) ]

    Gene ID: 560699, updated on 9-Dec-2024

    Summary

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    Official Symbol
    prr36aprovided by ZNC
    Official Full Name
    proline rich 36aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-6275
    See related
    Ensembl:ENSDARG00000069595 AllianceGenome:ZFIN:ZDB-GENE-030131-6275
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    prr36; fi41g12; wu:fi41g12; si:ch211-214c7.4
    Summary
    Orthologous to human PRR36 (proline rich 36). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See prr36a in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (45707198..45744707)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (45015291..45051125)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene trafficking protein particle complex subunit 5 Neighboring gene mucolipin TRP cation channel 1a Neighboring gene si:ch211-214c7.5 Neighboring gene protein kinase N1a Neighboring gene mitogen-activated protein kinase kinase 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Dysregulation of Microglial Function Contributes to Neuronal Impairment in Mcoln1a-Deficient Zebrafish. Jin W, et al. iScience, 2019 Mar 29. PMID 30897512, Free PMC Article
    2. The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Braasch I, et al. Nat Genet, 2016 Apr. PMID 26950095, Free PMC Article
    3. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    4. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    5. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    mucin-4; uncharacterized protein LOC560699

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      45707198..45744707
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_684096.9 → XP_689188.4  mucin-4

      UniProtKB/TrEMBL
      A0A8N7T5T5, F6P0E6
      Related
      ENSDARP00000117940.2, ENSDART00000143363.4
      Conserved Domains (3) summary
      pfam15363
      Location:1461 → 1505
      DUF4596; Domain of unknown function (DUF4596)
      cd16269
      Location:1271 → 1282
      GBP_C; coiled coil [structural motif]
      cl20817
      Location:1220 → 1284
      GBP_C; Guanylate-binding protein, C-terminal domain
    Nucleotide Protein Strain
    Heading Accession and Version

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