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    C15orf32 chromosome 15 putative open reading frame 32 [ Homo sapiens (human) ]

    Gene ID: 145858, updated on 19-Sep-2024

    Summary

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    Official Symbol
    C15orf32provided by HGNC
    Official Full Name
    chromosome 15 putative open reading frame 32provided by HGNC
    Primary source
    HGNC:HGNC:26549
    See related
    Ensembl:ENSG00000183643 AllianceGenome:HGNC:26549
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    all
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    Genomic context

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    See C15orf32 in Genome Data Viewer
    Location:
    15q26.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (92471677..92501117)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (90234105..90263542)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (93014907..93044347)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr15:92972458-92973657 Neighboring gene enolase 1 pseudogene 2 Neighboring gene uncharacterized LOC104613533 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr15:93053451-93053972 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:93061329-93061830 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:93064789-93065381 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:93105459-93105998 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:93105999-93106536 Neighboring gene long intergenic non-protein coding RNA 930 Neighboring gene MPRA-validated peak2428 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:93156777-93157278 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10112 Neighboring gene uncharacterized LOC124903559 Neighboring gene family with sequence similarity 174 member B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Genome-wide association study of bipolar I disorder in the Han Chinese population. Lee MT, et al. Mol Psychiatry, 2011 May. PMID 20386566
    2. A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications. Heath AC, et al. Biol Psychiatry, 2011 Sep 15. PMID 21529783, Free PMC Article
    3. Genome-wide genetic and transcriptomic investigation of variation in antibody response to dietary antigens. Rubicz R, et al. Genet Epidemiol, 2014 Jul. PMID 24962563, Free PMC Article
    4. Framingham Heart Study genome-wide association: results for pulmonary function measures. Wilk JB, et al. BMC Med Genet, 2007 Sep 19. PMID 17903307, Free PMC Article
    5. Interactome Mapping Provides a Network of Neurodegenerative Disease Proteins and Uncovers Widespread Protein Aggregation in Affected Brains. Haenig C, et al. Cell Rep, 2020 Aug 18. PMID 32814053

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.
    EBI GWAS Catalog
    Framingham Heart Study genome-wide association: results for pulmonary function measures.
    EBI GWAS Catalog
    Genome-wide association study of bipolar I disorder in the Han Chinese population.
    EBI GWAS Catalog
    Genome-wide genetic and transcriptomic investigation of variation in antibody response to dietary antigens.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Other Names

    • uncharacterized protein C15orf32

    Clone Names

    • FLJ32831, MGC129836, MGC129837

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_161370.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC090985
      Related
      ENST00000624458.1

    2. NR_161371.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC090985

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      92471677..92501117
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      90234105..90263542
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001301106.1: Suppressed sequence

      Description
      NM_001301106.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.

    2. NM_153040.2: Suppressed sequence

      Description
      NM_153040.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q32M92.2 GenPept UniProtKB/Swiss-Prot:Q32M92

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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