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    LINC00648 long intergenic non-protein coding RNA 648 [ Homo sapiens (human) ]

    Gene ID: 100506433, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC00648provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 648provided by HGNC
    Primary source
    HGNC:HGNC:44302
    See related
    Ensembl:ENSG00000259129 AllianceGenome:HGNC:44302
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC00648 in Genome Data Viewer
    Location:
    14q21.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (47764953..47795014, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (41963807..41993853, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (48234156..48264217, complement)

    Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene MAM domain containing glycosylphosphatidylinositol anchor 2 Neighboring gene ribosomal protein S15a pseudogene 3 Neighboring gene NANOG hESC enhancer GRCh37_chr14:48005441-48006008 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:48034589-48035090 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:48035091-48035590 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr14:48088147-48089346 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:48145545-48146044 Neighboring gene kinesin family member 20B pseudogene Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr14:48264343-48264842 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr14:48263841-48264342 Neighboring gene microRNA 548y Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:48435515-48436135 Neighboring gene ataxin 3 pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr14:48526825-48527326 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:48656073-48656618 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:48656619-48657164 Neighboring gene uncharacterized LOC101927483

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_039996.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK056212, AL162551, CA435241
      Related
      ENST00000555985.6

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

      Range
      47764953..47795014 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060938.1 Alternate T2T-CHM13v2.0

      Range
      41963807..41993853 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)