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    ndufc1 NADH:ubiquinone oxidoreductase subunit C1 [ Danio rerio (zebrafish) ]

    Gene ID: 100000992, updated on 2-Nov-2024

    Summary

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    Official Symbol
    ndufc1provided by ZNC
    Official Full Name
    NADH:ubiquinone oxidoreductase subunit C1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-141216-417
    See related
    Ensembl:ENSDARG00000103101 AllianceGenome:ZFIN:ZDB-GENE-141216-417
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch211-235e9.6
    Summary
    Predicted to be located in membrane and mitochondrion. Predicted to be part of respiratory chain complex I. Orthologous to human NDUFC1 (NADH:ubiquinone oxidoreductase subunit C1). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See ndufc1 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (46114456..46117345, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (47127164..47130053, complement)

    Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene E74-like factor 2a (ets domain transcription factor) Neighboring gene mitochondria localized glutamic acid rich protein a Neighboring gene N-alpha-acetyltransferase 15, NatA auxiliary subunit a Neighboring gene ureidoglycolate lyase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Systematic identification and characterization of cardiac long intergenic noncoding RNAs in zebrafish. Wang L, et al. Sci Rep, 2017 Apr 28. PMID 28455512, Free PMC Article
    2. Gene Characterization of Nocturnin Paralogues in Goldfish: Full Coding Sequences, Structure, Phylogeny and Tissue Expression. Madera D, et al. Int J Mol Sci, 2023 Dec 19. PMID 38203224, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of respiratory chain complex I IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial
    Names
    LOC100000992oa
    NADH dehydrogenase (ubiquinone) 1 subunit C1, mitochondria-like
    NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa
    TCONS_00023933

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001282048.1 → NP_001268977.1  NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial

      Status: VALIDATED

      Source sequence(s)
      AL929007, EH543676
      UniProtKB/TrEMBL
      A0A0R4IV80, A0A8M1P062
      Related
      ENSDARP00000140562.1, ENSDART00000172166.2
      Conserved Domains (1) summary
      pfam15088
      Location:22 → 69
      NADH_dh_m_C1; NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007125.7 Reference GRCz11 Primary Assembly

      Range
      46114456..46117345 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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