U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ubap2l ubiquitin associated protein 2-like [ Danio rerio (zebrafish) ]

    Gene ID: 100034477, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ubap2lprovided by ZNC
    Official Full Name
    ubiquitin associated protein 2-likeprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060503-244
    See related
    Ensembl:ENSDARG00000063219 AllianceGenome:ZFIN:ZDB-GENE-060503-244
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    sb:eu902; si:dkey-204a24.7
    Summary
    Predicted to be active in cytoplasm and nucleus. Orthologous to human UBAP2L (ubiquitin associated protein 2 like). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ubap2l in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (7757618..7797957)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (7838685..7879032)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene si:dkey-204a24.11 Neighboring gene tuftelin 1b Neighboring gene HCLS1 associated protein X-1 Neighboring gene aquaporin 10b

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A zebrafish model for HAX1-associated congenital neutropenia. Doll L, et al. Haematologica, 2021 May 1. PMID 32327498, Free PMC Article
    2. Identification of p53-target genes in Danio rerio. Mandriani B, et al. Sci Rep, 2016 Sep 1. PMID 27581768, Free PMC Article
    3. RNA-Seq analysis in mutant zebrafish reveals role of U1C protein in alternative splicing regulation. Rösel TD, et al. EMBO J, 2011 May 18. PMID 21468032, Free PMC Article
    4. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    5. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    ubiquitin-associated protein 2-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001083066.1 → NP_001076535.1  ubiquitin-associated protein 2-like

      See identical proteins and their annotated locations for NP_001076535.1

      Status: PROVISIONAL

      Source sequence(s)
      CR628394
      UniProtKB/TrEMBL
      A0A8M9PG67, I3IS02, Q1L8T3
      Related
      ENSDARP00000125665.3, ENSDART00000151400.3
      Conserved Domains (3) summary
      cd14277
      Location:52 → 89
      UBA_UBP2_like; UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins
      pfam12478
      Location:535 → 562
      DUF3697; Ubiquitin-associated protein 2
      cl22853
      Location:569 → 735
      Motor_domain; Myosin and Kinesin motor domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      7757618..7797957
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005159396.5 → XP_005159453.1  ubiquitin-associated protein 2-like isoform X1

      See identical proteins and their annotated locations for XP_005159453.1

      UniProtKB/TrEMBL
      A0A8M2B5X1
      Conserved Domains (2) summary
      cd14277
      Location:52 → 89
      UBA_UBP2_like; UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins
      pfam12478
      Location:551 → 578
      DUF3697; Ubiquitin-associated protein 2

    2. XM_068215010.1 → XP_068071111.1  ubiquitin-associated protein 2-like isoform X3

      UniProtKB/TrEMBL
      A0A8M9PN11

    3. XM_005159397.5 → XP_005159454.1  ubiquitin-associated protein 2-like isoform X1

      See identical proteins and their annotated locations for XP_005159454.1

      UniProtKB/TrEMBL
      A0A8M2B5X1
      Conserved Domains (2) summary
      cd14277
      Location:52 → 89
      UBA_UBP2_like; UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins
      pfam12478
      Location:551 → 578
      DUF3697; Ubiquitin-associated protein 2

    4. XM_021467968.2 → XP_021323643.1  ubiquitin-associated protein 2-like isoform X5

      UniProtKB/TrEMBL
      A0A8M9PAR6
      Conserved Domains (3) summary
      cd14277
      Location:52 → 89
      UBA_UBP2_like; UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins
      pfam12478
      Location:551 → 578
      DUF3697; Ubiquitin-associated protein 2
      cl22853
      Location:585 → 751
      Motor_domain; Myosin and Kinesin motor domain

    5. XM_021467966.2 → XP_021323641.1  ubiquitin-associated protein 2-like isoform X3

      UniProtKB/TrEMBL
      A0A8M9PN11
      Conserved Domains (3) summary
      cd14277
      Location:52 → 89
      UBA_UBP2_like; UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins
      pfam12478
      Location:536 → 563
      DUF3697; Ubiquitin-associated protein 2
      cl22853
      Location:570 → 736
      Motor_domain; Myosin and Kinesin motor domain

    6. XM_021467965.2 → XP_021323640.1  ubiquitin-associated protein 2-like isoform X2

      UniProtKB/TrEMBL
      A0A8M9PR82
      Conserved Domains (3) summary
      cd14277
      Location:52 → 89
      UBA_UBP2_like; UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins
      pfam12478
      Location:550 → 577
      DUF3697; Ubiquitin-associated protein 2
      cl22853
      Location:584 → 750
      Motor_domain; Myosin and Kinesin motor domain

    7. XM_021467967.2 → XP_021323642.1  ubiquitin-associated protein 2-like isoform X4

      UniProtKB/TrEMBL
      A0A8M9P1N2
      Related
      ENSDARP00000086571.6, ENSDART00000092138.8
      Conserved Domains (3) summary
      cd14277
      Location:52 → 89
      UBA_UBP2_like; UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins
      pfam12478
      Location:535 → 562
      DUF3697; Ubiquitin-associated protein 2
      cl22853
      Location:569 → 735
      Motor_domain; Myosin and Kinesin motor domain

    8. XM_021467969.2 → XP_021323644.1  ubiquitin-associated protein 2-like isoform X6

      UniProtKB/TrEMBL
      A0A8M9PG67, I3IS02, Q1L8T3
      Related
      ENSDARP00000086545.6, ENSDART00000092112.8
      Conserved Domains (3) summary
      cd14277
      Location:52 → 89
      UBA_UBP2_like; UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins
      pfam12478
      Location:535 → 562
      DUF3697; Ubiquitin-associated protein 2
      cl22853
      Location:569 → 735
      Motor_domain; Myosin and Kinesin motor domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.