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    ftr88 finTRIM family, member 88 [ Danio rerio (zebrafish) ]

    Gene ID: 797531, updated on 2-Nov-2024

    Summary

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    Official Symbol
    ftr88provided by ZNC
    Official Full Name
    finTRIM family, member 88provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-131125-2
    See related
    Ensembl:ENSDARG00000097679 AllianceGenome:ZFIN:ZDB-GENE-131125-2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:dkey-101o7.6
    Summary
    Predicted to enable ligase activity and zinc ion binding activity. Predicted to be located in cytoplasm. Orthologous to several human genes including TRIM29 (tripartite motif containing 29); TRIM4 (tripartite motif containing 4); and TRIM49 (tripartite motif containing 49). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See ftr88 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (41735579..41747286, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (41779930..41789900, complement)

    Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene finTRIM family, member 76 Neighboring gene finTRIM family, member 77 Neighboring gene finTRIM family, member 73 Neighboring gene finTRIM family, member 72 Neighboring gene finTRIM family, member 91 Neighboring gene solute carrier family 25 member 36b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    E3 ubiquitin/ISG15 ligase TRIM25

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007126.7 Reference GRCz11 Primary Assembly

      Range
      41735579..41747286 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017351259.3 → XP_017206748.1  E3 ubiquitin/ISG15 ligase TRIM25

      UniProtKB/TrEMBL
      A0A8M6Z0Z9, X1WD42
      Related
      ENSDARP00000128139.2, ENSDART00000156690.3
      Conserved Domains (3) summary
      pfam00643
      Location:145 → 181
      zf-B_box; B-box zinc finger
      pfam15227
      Location:15 → 57
      zf-C3HC4_4; zinc finger of C3HC4-type, RING
      cd16040
      Location:368 → 544
      SPRY_PRY_SNTX; Stonustoxin subunit alpha or SNTX subunit alpha
    Nucleotide Protein
    Heading Accession and Version

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