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    zc3h10 zinc finger CCCH-type containing 10 [ Danio rerio (zebrafish) ]

    Gene ID: 404630, updated on 9-Dec-2024

    Summary

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    Official Symbol
    zc3h10provided by ZNC
    Official Full Name
    zinc finger CCCH-type containing 10provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-2359
    See related
    Ensembl:ENSDARG00000030335 AllianceGenome:ZFIN:ZDB-GENE-040426-2359
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:77248; SI:zC239J9.3
    Summary
    Predicted to enable RNA binding activity. Predicted to be involved in regulation of RNA splicing. Orthologous to human ZC3H10 (zinc finger CCCH-type containing 10). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See zc3h10 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (52242255..52253624)
    105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (52242256..52253625)

    Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene translocase of outer mitochondrial membrane 34 Neighboring gene cytochrome c oxidase subunit 6C Neighboring gene extended synaptotagmin-like protein 1b Neighboring gene U2 spliceosomal RNA Neighboring gene eukaryotic translation initiation factor 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Identification of the 14-3-3 β/α-A protein as a novel maternal peptidoglycan-binding protein that protects embryos of zebrafish against bacterial infections. Wang X, et al. Dev Comp Immunol, 2021 Jan. PMID 32931839
    2. Expressed sequence tag analysis of expression profiles of zebrafish testis and ovary. Zeng S, et al. Gene, 2002 Jul 10. PMID 12234666
    3. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC77248

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of RNA splicing IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger CCCH domain-containing protein 10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_207098.1 → NP_996981.1  zinc finger CCCH domain-containing protein 10

      See identical proteins and their annotated locations for NP_996981.1

      Status: PROVISIONAL

      Source sequence(s)
      BC066420
      UniProtKB/TrEMBL
      Q6NYY1, Q6ZM22
      Related
      ENSDARP00000041548.3, ENSDART00000041549.4
      Conserved Domains (2) summary
      smart00356
      Location:168 → 191
      ZnF_C3H1; zinc finger
      cl19252
      Location:351 → 437
      MreC; rod shape-determining protein MreC

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007117.7 Reference GRCz11 Primary Assembly

      Range
      52242255..52253624
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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