U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    si:dkey-23i12.5 si:dkey-23i12.5 [ Danio rerio (zebrafish) ]

    Gene ID: 325112, updated on 2-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    si:dkey-23i12.5provided by ZNC
    Official Full Name
    si:dkey-23i12.5provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-141222-32
    See related
    Ensembl:ENSDARG00000103682 AllianceGenome:ZFIN:ZDB-GENE-141222-32
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc55g01; wu:fc55g01
    Summary
    Is expressed in blastomere. [provided by Alliance of Genome Resources, Nov 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See si:dkey-23i12.5 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (25042081..25046777)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (24770924..24775620)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I) Neighboring gene sb:cb1058 Neighboring gene small nucleolar RNA SNORD31 Neighboring gene small nucleolar RNA SNORD29 Neighboring gene small nucleolar RNA SNORD30 Neighboring gene small nucleolar RNA SNORD22 Neighboring gene small nucleolar RNA SNORD31 Neighboring gene small nucleolar RNA SNORD31 Neighboring gene ADP-ribosylation factor-like 2 Neighboring gene basic leucine zipper ATF-like transcription factor 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The guanine nucleotide exchange factor Net1 facilitates the specification of dorsal cell fates in zebrafish embryos by promoting maternal β-catenin activation. Wei S, et al. Cell Res, 2017 Feb. PMID 27910850, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_120316.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL954715, EH443055
      Related
      ENSDART00000165314.2

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      25042081..25046777
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394690.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      15821..20517
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.