slc20a1a solute carrier family 20 member 1a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: slc20a1aprovided by ZNC
Official Full Name: solute carrier family 20 member 1aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-2217
See related: Ensembl:ENSDARG00000020114 AllianceGenome:ZFIN:ZDB-GENE-040426-2217
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: sb:cb1011; zgc:85672
Summary: Predicted to enable phosphate transmembrane transporter activity. Acts upstream of or within cloaca development. Predicted to be located in membrane. Is expressed in several structures, including blood; cloaca; intermediate mesoderm; renal system; and vein. Orthologous to human SLC20A1 (solute carrier family 20 member 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 8

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	8	NC_007119.7 (31057115..31074954, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	8	NC_007119.6 (31047883..31065783, complement)

Chromosome 8 - NC_007119.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables phosphate transmembrane transporter activity	IBA Inferred from Biological aspect of Ancestor more info
enables phosphate transmembrane transporter activity	IEA Inferred from Electronic Annotation more info
enables symporter activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within cloaca development	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in phosphate ion transmembrane transport	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within phosphate ion transport	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within renal system development	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: sodium-dependent phosphate transporter 1-A

Names: solute carrier family 20 member 1-A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_213179.1 → NP_998344.1 sodium-dependent phosphate transporter 1-A

See identical proteins and their annotated locations for NP_998344.1

Status: PROVISIONAL

Source sequence(s)

BC068354

UniProtKB/Swiss-Prot

Q6NV12

Related

ENSDARP00000005218.8, ENSDART00000010993.10

Conserved Domains (2) summary

COG0306
Location:479 → 644

PitA; Phosphate/sulfate permease [Inorganic ion transport and metabolism]

pfam01384
Location:538 → 636

PHO4; Phosphate transporter family

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007119.7 Reference GRCz11 Primary Assembly

Range

31057115..31074954 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005167150.5 → XP_005167207.1 sodium-dependent phosphate transporter 1-A isoform X1

UniProtKB/TrEMBL

A0A8M2BEL0

Conserved Domains (2) summary

COG0306
Location:475 → 640

PitA; Phosphate/sulfate permease [Inorganic ion transport and metabolism]

pfam01384
Location:534 → 632

PHO4; Phosphate transporter family