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    si:ch211-125o16.4 si:ch211-125o16.4 [ Danio rerio (zebrafish) ]

    Gene ID: 566639, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:ch211-125o16.4provided by ZNC
    Official Full Name
    si:ch211-125o16.4provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-131120-100
    See related
    Ensembl:ENSDARG00000056836 AllianceGenome:ZFIN:ZDB-GENE-131120-100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to be involved in regulation of RNA splicing. Predicted to be active in costamere and nucleus. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 3 and Charcot-Marie-Tooth disease type 4F. Orthologous to human PRX (periaxin). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See si:ch211-125o16.4 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (22544648..22552691, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (22524810..22532859, complement)

    Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137488096 Neighboring gene EDAR-associated death domain Neighboring gene exonuclease 1 Neighboring gene Yip1 domain family, member 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in regulation of RNA splicing IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in costamere IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    neuroblast differentiation-associated protein AHNAK
    Names
    neuroblast differentiation-associated protein AHNAK-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007128.7 Reference GRCz11 Primary Assembly

      Range
      22544648..22552691 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_689917.10 → XP_695009.4  neuroblast differentiation-associated protein AHNAK

      See identical proteins and their annotated locations for XP_695009.4

      UniProtKB/TrEMBL
      A0A8M2B557, A0A8M9PET9, F1QQL4
      Conserved Domains (2) summary
      pfam05170
      Location:620 → 1052
      AsmA; AsmA family
      pfam13349
      Location:1239 → 1390
      DUF4097; Putative adhesin

    2. XM_005158705.5 → XP_005158762.1  neuroblast differentiation-associated protein AHNAK

      See identical proteins and their annotated locations for XP_005158762.1

      UniProtKB/TrEMBL
      A0A8M2B557, A0A8M9PET9, F1QQL4
      Related
      ENSDARP00000073857.3, ENSDART00000079401.4
      Conserved Domains (2) summary
      pfam05170
      Location:620 → 1052
      AsmA; AsmA family
      pfam13349
      Location:1239 → 1390
      DUF4097; Putative adhesin

    3. XM_068214583.1 → XP_068070684.1  neuroblast differentiation-associated protein AHNAK

      UniProtKB/TrEMBL
      A0A8M2B557, A0A8M9PET9, F1QQL4

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395328.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      261478..269597 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021474361.2 → XP_021330036.1  neuroblast differentiation-associated protein AHNAK

      UniProtKB/TrEMBL
      A0A8M9PFQ0, A0A8M9Q4Z4
      Conserved Domains (1) summary
      cl27168
      Location:388 → 1385
      TamB; inner membrane protein subunit of TAM complex

    2. XM_021474360.2 → XP_021330035.1  neuroblast differentiation-associated protein AHNAK

      UniProtKB/TrEMBL
      A0A8M9PFQ0, A0A8M9Q4Z4
      Conserved Domains (1) summary
      cl27168
      Location:388 → 1385
      TamB; inner membrane protein subunit of TAM complex

    3. XM_068219342.1 → XP_068075443.1  neuroblast differentiation-associated protein AHNAK

      UniProtKB/TrEMBL
      A0A8M9PFQ0, A0A8M9Q4Z4
    Nucleotide Protein Strain
    Heading Accession and Version

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