atp5f1d ATP synthase F1 subunit delta [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: atp5f1dprovided by ZNC
Official Full Name: ATP synthase F1 subunit deltaprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-7649
See related: Ensembl:ENSDARG00000019404 AllianceGenome:ZFIN:ZDB-GENE-030131-7649
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: atp5d; fk58f09; zgc:73303; wu:fk58f09
Summary: Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in proton motive force-driven ATP synthesis. Predicted to act upstream of or within monoatomic ion transport. Predicted to be located in mitochondrial inner membrane. Predicted to be part of proton-transporting ATP synthase complex, catalytic core F(1). Is expressed in several structures, including adaxial cell; alar plate midbrain region; digestive system; optic tectum; and retina. Human ortholog(s) of this gene implicated in mitochondrial complex V (ATP synthase) deficiency nuclear type 5. Orthologous to human ATP5F1D (ATP synthase F1 subunit delta). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 22

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	22	NC_007133.7 (18766065..18778905, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	22	NC_007133.6 (18741087..18753927, complement)

Chromosome 22 - NC_007133.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
contributes_to proton-transporting ATP synthase activity, rotational mechanism	IBA Inferred from Biological aspect of Ancestor more info
enables proton-transporting ATP synthase activity, rotational mechanism	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within monoatomic ion transport	IEA Inferred from Electronic Annotation more info
involved_in proton motive force-driven ATP synthesis	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within proton motive force-driven ATP synthesis	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in mitochondrial inner membrane	IEA Inferred from Electronic Annotation more info
located_in mitochondrion	IEA Inferred from Electronic Annotation more info
part_of proton-transporting ATP synthase complex, catalytic core F(1)	IBA Inferred from Biological aspect of Ancestor more info
part_of proton-transporting ATP synthase complex, catalytic core F(1)	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: ATP synthase subunit delta, mitochondrial

Names: ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit

NP_956262.1

EC 3.6.1.14

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_199968.1 → NP_956262.1 ATP synthase subunit delta, mitochondrial

See identical proteins and their annotated locations for NP_956262.1

Status: PROVISIONAL

Source sequence(s)

BC059627

UniProtKB/TrEMBL

Q6P1J5

Related

ENSDARP00000022528.7, ENSDART00000019235.8

Conserved Domains (2) summary

cd12152
Location:29 → 153

F1-ATPase_delta; mitochondrial ATP synthase delta subunit

COG0355
Location:27 → 158

AtpC; FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]