U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    tmcc1b transmembrane and coiled-coil domain family 1b [ Danio rerio (zebrafish) ]

    Gene ID: 563581, updated on 2-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    tmcc1bprovided by ZNC
    Official Full Name
    transmembrane and coiled-coil domain family 1bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-061013-154
    See related
    Ensembl:ENSDARG00000060954 AllianceGenome:ZFIN:ZDB-GENE-061013-154
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:153972
    Summary
    Predicted to be located in membrane. Predicted to be active in endomembrane system. Orthologous to human TMCC1 (transmembrane and coiled-coil domain family 1). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See tmcc1b in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (18202463..18244570)
    105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (18029345..18075068, complement)

    Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100538023 Neighboring gene uncharacterized LOC100334068 Neighboring gene musculoskeletal, embryonic nuclear protein 1b Neighboring gene uncharacterized LOC563780 Neighboring gene STIM activating enhance

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in endomembrane system IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    transmembrane and coiled-coil domains protein 1b

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001080008.1 → NP_001073477.1  transmembrane and coiled-coil domains protein 1b

      See identical proteins and their annotated locations for NP_001073477.1

      Status: PROVISIONAL

      Source sequence(s)
      BC124781
      UniProtKB/TrEMBL
      A0A8M6Z929, Q08BC7
      Related
      ENSDARP00000080872.4, ENSDART00000086437.6
      Conserved Domains (1) summary
      pfam10267
      Location:241 → 641
      Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007122.7 Reference GRCz11 Primary Assembly

      Range
      18202463..18244570
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068224193.1 → XP_068080294.1  transmembrane and coiled-coil domains protein 1b isoform X1

    2. XM_068224194.1 → XP_068080295.1  transmembrane and coiled-coil domains protein 1b isoform X2

    3. XM_005172858.5 → XP_005172915.1  transmembrane and coiled-coil domains protein 1b isoform X1

      See identical proteins and their annotated locations for XP_005172915.1

      UniProtKB/TrEMBL
      A0A8M6Z929, Q08BC7
      Related
      ENSDARP00000144551.1, ENSDART00000175559.2
      Conserved Domains (1) summary
      pfam10267
      Location:241 → 641
      Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

    4. XM_068224196.1 → XP_068080297.1  transmembrane and coiled-coil domains protein 1b isoform X4

    5. XM_005172861.5 → XP_005172918.1  transmembrane and coiled-coil domains protein 1b isoform X3

      UniProtKB/TrEMBL
      A0A8M6Z126
      Conserved Domains (1) summary
      pfam10267
      Location:118 → 518
      Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

    6. XM_021479640.2 → XP_021335315.1  transmembrane and coiled-coil domains protein 1b isoform X1

      UniProtKB/TrEMBL
      A0A8M6Z929, Q08BC7
      Conserved Domains (1) summary
      pfam10267
      Location:241 → 641
      Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

    7. XM_017358243.3 → XP_017213732.1  transmembrane and coiled-coil domains protein 1b isoform X3

      UniProtKB/TrEMBL
      A0A8M6Z126
      Conserved Domains (1) summary
      pfam10267
      Location:118 → 518
      Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

    8. XM_017358241.3 → XP_017213730.1  transmembrane and coiled-coil domains protein 1b isoform X1

      UniProtKB/TrEMBL
      A0A8M6Z929, Q08BC7
      Conserved Domains (1) summary
      pfam10267
      Location:241 → 641
      Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

    9. XM_005172859.5 → XP_005172916.1  transmembrane and coiled-coil domains protein 1b isoform X1

      See identical proteins and their annotated locations for XP_005172916.1

      UniProtKB/TrEMBL
      A0A8M6Z929, Q08BC7
      Conserved Domains (1) summary
      pfam10267
      Location:241 → 641
      Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

    10. XM_009300579.3 → XP_009298854.1  transmembrane and coiled-coil domains protein 1b isoform X1

      See identical proteins and their annotated locations for XP_009298854.1

      UniProtKB/TrEMBL
      A0A8M6Z929, Q08BC7
      Conserved Domains (1) summary
      pfam10267
      Location:241 → 641
      Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

    11. XM_068224195.1 → XP_068080296.1  transmembrane and coiled-coil domains protein 1b isoform X2

    12. XM_005172860.5 → XP_005172917.1  transmembrane and coiled-coil domains protein 1b isoform X1

      See identical proteins and their annotated locations for XP_005172917.1

      UniProtKB/TrEMBL
      A0A8M6Z929, Q08BC7
      Conserved Domains (1) summary
      pfam10267
      Location:241 → 641
      Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

    RNA

    1. XR_011017121.1 RNA Sequence

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394814.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      139752..167918
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.