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    LINC02997 long intergenic non-protein coding RNA 2997 [ Homo sapiens (human) ]

    Gene ID: 101928858, updated on 28-Oct-2024

    Summary

    Official Symbol
    LINC02997provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2997provided by HGNC
    Primary source
    HGNC:HGNC:56113
    See related
    Ensembl:ENSG00000249364 AllianceGenome:HGNC:56113
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in liver (RPKM 1.5), testis (RPKM 0.4) and 1 other tissue See more
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    Genomic context

    See LINC02997 in Genome Data Viewer
    Location:
    5q13.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (67793213..67801058)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (68615455..68623300)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (67089041..67096886)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2242 Neighboring gene BCL9 pseudogene 1 Neighboring gene mitochondrial ribosomal protein L39 pseudogene Neighboring gene Sharpr-MPRA regulatory region 2818 Neighboring gene Sharpr-MPRA regulatory region 2346 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:67075540-67076172 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:67076173-67076803 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16071 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:67113847-67114545 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:67140720-67141282 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:67185144-67185715 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:67185716-67186286 Neighboring gene uncharacterized LOC105379007 Neighboring gene uncharacterized LOC107986420 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22627 Neighboring gene uncharacterized LOC124900990

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_130779.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC106798
      Related
      ENST00000513234.7

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      67793213..67801058
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      68615455..68623300
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)