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    Pnoc prepronociceptin [ Mus musculus (house mouse) ]

    Gene ID: 18155, updated on 9-Dec-2024

    Summary

    Official Symbol
    Pnocprovided by MGI
    Official Full Name
    prepronociceptinprovided by MGI
    Primary source
    MGI:MGI:105308
    See related
    Ensembl:ENSMUSG00000045731 AllianceGenome:MGI:105308
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    N/OFQ; Npnc1; OFQ/N
    Summary
    This gene encodes the precursor for neuropeptides that have been implicated in a wide range of physiological roles such as transmission and sensitivity to pain, learning, memory, anxiety and depression, in the central nervous system. The encoded protein is a precursor that is proteolytically processed to generate multiple biologically active peptides including nociceptin and nocistatin which have opposite functions in pain transmission. Mice lacking the encoded protein display increased anxiety, elevated basal pain threshold and impaired adaptation to repeated stress. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jul 2015]
    Expression
    Biased expression in whole brain E14.5 (RPKM 9.2), CNS E14 (RPKM 8.2) and 10 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Pnoc in Genome Data Viewer
    Location:
    14 D1; 14 34.33 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (65638931..65662908, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (65400673..65425564, complement)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene F-box protein 16 Neighboring gene STARR-seq mESC enhancer starr_36967 Neighboring gene predicted gene, 41178 Neighboring gene STARR-positive B cell enhancer ABC_E4114 Neighboring gene STARR-positive B cell enhancer ABC_E3120 Neighboring gene predicted gene, 48449 Neighboring gene STARR-seq mESC enhancer starr_36972 Neighboring gene zinc finger protein 395 Neighboring gene STARR-positive B cell enhancer mm9_chr14:66008600-66008901 Neighboring gene RIKEN cDNA 9530047P18 gene Neighboring gene elongator acetyltransferase complex subunit 3 Neighboring gene STARR-seq mESC enhancer starr_36974 Neighboring gene CapStarr-seq enhancer MGSCv37_chr14:66211806-66212040

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 
    • Targeted (4)  1 citation

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables opioid peptide activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables opioid receptor binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables receptor ligand activity IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in chemical synaptic transmission IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in chemical synaptic transmission ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in neuron-neuron synaptic transmission IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in neuropeptide signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in neuropeptide signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in neuropeptide signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in sensory perception IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in sensory perception of pain IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in axon terminus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in dendrite IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in neuronal cell body IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in synaptic membrane IGI
    Inferred from Genetic Interaction
    more info
    PubMed 

    General protein information

    Preferred Names
    prepronociceptin
    Names
    neuropeptide nociceptin 1
    orphanin FQ
    proorphanin

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001205075.2NP_001192004.1  prepronociceptin isoform 2 preproprotein

      See identical proteins and their annotated locations for NP_001192004.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) uses an alternate donor splice site at the penultimate exon compared to variant 1. This results in a frameshift, and a longer isoform (2, also known as N27K) with a distinct C-terminus, compared to isoform 1.
      Source sequence(s)
      AC158983
      Consensus CDS
      CCDS88690.1
      UniProtKB/TrEMBL
      B7ZMX9
      Related
      ENSMUSP00000153589.2, ENSMUST00000224594.2
      Conserved Domains (1) summary
      pfam01160
      Location:2165
      Opiods_neuropep; Vertebrate endogenous opioids neuropeptide
    2. NM_001424488.1NP_001411417.1  prepronociceptin isoform 1 preproprotein

      Status: REVIEWED

      Source sequence(s)
      AC158983
      UniProtKB/Swiss-Prot
      Q61105, Q61938, Q64387
      UniProtKB/TrEMBL
      Q543U6
    3. NM_001424489.1NP_001411418.1  prepronociceptin isoform 2 preproprotein

      Status: REVIEWED

      Source sequence(s)
      AC158983
      UniProtKB/TrEMBL
      B7ZMX9
    4. NM_010932.3NP_035062.1  prepronociceptin isoform 1 preproprotein

      See identical proteins and their annotated locations for NP_035062.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the shorter protein (isoform 1, also known as N23K).
      Source sequence(s)
      AC158983
      Consensus CDS
      CCDS27213.1
      UniProtKB/Swiss-Prot
      Q61105, Q61938, Q64387
      UniProtKB/TrEMBL
      Q543U6
      Related
      ENSMUSP00000054210.6, ENSMUST00000059339.6
      Conserved Domains (1) summary
      pfam01160
      Location:2165
      Opiods_neuropep; Vertebrate endogenous opioids neuropeptide

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      65638931..65662908 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)