U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC101927539 uncharacterized LOC101927539 [ Homo sapiens (human) ]

    Gene ID: 101927539, updated on 10-Dec-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC101927539
    Gene description
    uncharacterized LOC101927539
    See related
    Ensembl:ENSG00000263499
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC101927539 in Genome Data Viewer
    Location:
    17q22
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (57600864..57608412, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (58476229..58483777, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (55678225..55685773, complement)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene musashi RNA binding protein 2 Neighboring gene uncharacterized LOC101927557 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr17:55601094-55602293 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr17:55605169-55606001 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12441 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12442 Neighboring gene uncharacterized LOC107984993 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12443 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:55638731-55639231 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:55656316-55656816 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:55656817-55657317 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr17:55665351-55665880 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:55680421-55680920 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:55682575-55683470 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12444 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:55685282-55685876 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:55685877-55686469 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12445 Neighboring gene RNA, 7SL, cytoplasmic 449, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:55716402-55717204 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:55720638-55720787 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:55726383-55727192 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:55740323-55740615 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:55741794-55742400 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8750 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:55753573-55754072 Neighboring gene RNA, U7 small nuclear 134 pseudogene

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110807.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007431, BC029915
      Related
      ENST00000578662.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      57600864..57608412 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      58476229..58483777 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials