LRRC52-AS1 LRRC52 antisense RNA 1 [Homo sapiens (human)] - Gene

Summary

Official Symbol: LRRC52-AS1provided by HGNC
Official Full Name: LRRC52 antisense RNA 1provided by HGNC
Primary source: HGNC:HGNC:54044
See related: Ensembl:ENSG00000237463 AllianceGenome:HGNC:54044
Gene type: ncRNA
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression: Biased expression in testis (RPKM 2.7), heart (RPKM 0.3) and 1 other tissue See more
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Genomic context

Location:: 1q23.3-q24.1

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCh38.p14 (GCF_000001405.40)	1	NC_000001.11 (165476842..165582155, complement)
RS_2024_08	current	T2T-CHM13v2.0 (GCF_009914755.1)	1	NC_060925.1 (164823196..164928618, complement)
RS_2024_09	previous assembly	GRCh37.p13 (GCF_000001405.25)	1	NC_000001.10 (165446079..165551392, complement)

Chromosome 1 - NC_000001.11 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Tissue-specific circular RNA induction during human fetal development
Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
BioProject: PRJNA270632
Publication: PMID 26076956
Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

LRRC52-AS1 is associated with clinical progression and regulates cell migration and invasion in papillary thyroid cancer.
Title: LRRC52-AS1 is associated with clinical progression and regulates cell migration and invasion in papillary thyroid cancer.

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Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N&#x02009;=&#x02009;1345 young and elderly subjects. EBI GWAS Catalog EBI GWAS CatalogPubMed

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

AL033633 (e-PCR)
- UniSTS:93465

RH65663 (e-PCR)
- UniSTS:85280

AL010024 (e-PCR)
- UniSTS:4134

D1S2197 (e-PCR)
- UniSTS:59475

RH92960 (e-PCR)
- UniSTS:84583

D1S2430 (e-PCR)
- UniSTS:56504

RH99273 (e-PCR)
- UniSTS:88251

RH121460 (e-PCR)
- UniSTS:134588

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.