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    N4bp2l1 NEDD4 binding protein 2-like 1 [ Mus musculus (house mouse) ]

    Gene ID: 100637, updated on 28-Oct-2024

    Summary

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    Official Symbol
    N4bp2l1provided by MGI
    Official Full Name
    NEDD4 binding protein 2-like 1provided by MGI
    Primary source
    MGI:MGI:2140872
    See related
    Ensembl:ENSMUSG00000041132 AllianceGenome:MGI:2140872
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2410024N18Rik; B230342M21Rik
    Summary
    Orthologous to human N4BP2L1 (NEDD4 binding protein 2 like 1). [provided by Alliance of Genome Resources, Oct 2024]
    Expression
    Ubiquitous expression in frontal lobe adult (RPKM 8.5), cortex adult (RPKM 8.5) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See N4bp2l1 in Genome Data Viewer
    Location:
    5 G3; 5 89.55 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (150495108..150518288, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (150571643..150598678, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene breast cancer 2, early onset Neighboring gene predicted gene, 23641 Neighboring gene predicted gene 42529 Neighboring gene STARR-positive B cell enhancer ABC_E3639 Neighboring gene STARR-positive B cell enhancer mm9_chr5:151397981-151398282 Neighboring gene STARR-seq mESC enhancer starr_14956 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:151414417-151414570 Neighboring gene NEDD4 binding protein 2-like 2 Neighboring gene STARR-positive B cell enhancer ABC_E10368 Neighboring gene STARR-positive B cell enhancer ABC_E2774 Neighboring gene STARR-positive B cell enhancer ABC_E6410 Neighboring gene STARR-positive B cell enhancer ABC_E6411 Neighboring gene STARR-positive B cell enhancer ABC_E3640 Neighboring gene predicted gene, 40353 Neighboring gene STARR-seq mESC enhancer starr_14958 Neighboring gene PDS5 cohesin associated factor B Neighboring gene STARR-positive B cell enhancer ABC_E4810 Neighboring gene predicted gene, 24630

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
    2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    NEDD4-binding protein 2-like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_133898.4 → NP_598659.3  NEDD4-binding protein 2-like 1

      See identical proteins and their annotated locations for NP_598659.3

      Status: VALIDATED

      Source sequence(s)
      AK131647, BB629746, BE447039
      Consensus CDS
      CCDS19887.1
      UniProtKB/Swiss-Prot
      Q3UU88, Q3V2Q8, Q8BL78, Q8VE50
      Related
      ENSMUSP00000016279.8, ENSMUST00000016279.11
      Conserved Domains (2) summary
      pfam13671
      Location:42 → 175
      AAA_33; AAA domain
      cl17190
      Location:42 → 175
      NK; Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates ...

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      150495108..150518288 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_003955567.2 RNA Sequence

    2. XR_003955566.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3V2Q8.1 GenPept UniProtKB/Swiss-Prot:Q3V2Q8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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