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    CRMA cardiomyocyte maturation associated lncRNA [ Homo sapiens (human) ]

    Gene ID: 253868, updated on 17-Sep-2024

    Summary

    Official Symbol
    CRMAprovided by HGNC
    Official Full Name
    cardiomyocyte maturation associated lncRNAprovided by HGNC
    Primary source
    HGNC:HGNC:26393
    See related
    AllianceGenome:HGNC:26393
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CARMA; C20orf200; NCRNA00335; MIR1-1HG-AS1; C20orf166-AS1
    Expression
    Biased expression in heart (RPKM 4.0), prostate (RPKM 2.7) and 8 other tissues See more
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    Genomic context

    See CRMA in Genome Data Viewer
    Location:
    20q13.33
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (62543070..62551561, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (64341587..64350086, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (61141438..61148768, complement)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18203 Neighboring gene uncharacterized LOC124904947 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61071135-61071640 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61071641-61072147 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61075123-61075623 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18204 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61086501-61087310 Neighboring gene uncharacterized LOC105376995 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:61147747-61148622 Neighboring gene MIR1-1 host gene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61153927-61154798 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61155669-61156540 Neighboring gene microRNA 1-1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61158329-61158846 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61158847-61159365 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61159366-61159883 Neighboring gene microRNA 133a-2

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.
    EBI GWAS Catalog

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Other Names

    • C20orf166 antisense RNA 1 (non-protein coding)
    • MIR1-1HG antisense RNA 1

    Clone Names

    • FLJ30313, MGC138143, DKFZp313D1938

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033263.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC161429, AK056546, AL449263, AL832097, DA722400

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      62543070..62551561 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      64341587..64350086 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_152757.1: Suppressed sequence

      Description
      NM_152757.1: This RefSeq was permanently suppressed because currently there is insufficient support for the protein.