U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LINC00900 long intergenic non-protein coding RNA 900 [ Homo sapiens (human) ]

    Gene ID: 283143, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC00900provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 900provided by HGNC
    Primary source
    HGNC:HGNC:27444
    See related
    AllianceGenome:HGNC:27444
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in skin (RPKM 3.1), adrenal (RPKM 1.0) and 18 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LINC00900 in Genome Data Viewer
    Location:
    11q23.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (115755331..115760200, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (115768476..115773345, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (115626049..115630918, complement)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:115504287-115504832 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:115504833-115505378 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:115516252-115516892 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:115526889-115527390 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:115535875-115536376 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:115536377-115536876 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:115540906-115541406 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:115541407-115541907 Neighboring gene long intergenic non-protein coding RNA 2698 Neighboring gene uncharacterized LOC101928985 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:115612437-115612979 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:115611894-115612436 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr11:115627599-115628798 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:115629978-115630512 Neighboring gene uncharacterized LOC107987165 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:115688718-115689307 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3919 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5546 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5547 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5548 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5549 Neighboring gene long intergenic non-protein coding RNA 2703 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr11:115812040-115813239

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Markers

    Other Names

    • CTC-774J1.2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_034148.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK090602, AP002991, BX094453, DA991791

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      115755331..115760200 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      115768476..115773345 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)