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    E230016M11Rik RIKEN cDNA E230016M11 gene [ Mus musculus (house mouse) ]

    Gene ID: 320172, updated on 22-Oct-2024

    Summary

    Official Symbol
    E230016M11Rikprovided by MGI
    Official Full Name
    RIKEN cDNA E230016M11 geneprovided by MGI
    Primary source
    MGI:MGI:2443524
    See related
    Ensembl:ENSMUSG00000087231 AllianceGenome:MGI:2443524
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Broad expression in ovary adult (RPKM 33.5), duodenum adult (RPKM 21.2) and 27 other tissues See more
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    Genomic context

    See E230016M11Rik in Genome Data Viewer
    Location:
    6 C1; 6 30.72 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (67013583..67057636)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (67036599..67080652)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene guanine nucleotide binding protein (G protein), gamma 12 Neighboring gene STARR-seq mESC enhancer starr_16163 Neighboring gene STARR-seq mESC enhancer starr_16164 Neighboring gene protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr6:66987352-66987653 Neighboring gene predicted gene, 53333 Neighboring gene predicted gene, 25260 Neighboring gene growth arrest and DNA-damage-inducible 45 alpha Neighboring gene STARR-seq mESC enhancer starr_16168 Neighboring gene predicted gene, 29928 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:67078989-67079098 Neighboring gene STARR-seq mESC enhancer starr_16169 Neighboring gene RIKEN cDNA A430010J10 gene Neighboring gene STARR-positive B cell enhancer ABC_E2786

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040278.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK029473
      Related
      ENSMUST00000130657.9

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      67013583..67057636
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)