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    LINC00853 long intergenic non-protein coding RNA 853 [ Homo sapiens (human) ]

    Gene ID: 100874253, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC00853provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 853provided by HGNC
    Primary source
    HGNC:HGNC:43716
    See related
    Ensembl:ENSG00000224805 AllianceGenome:HGNC:43716
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ncRNA-a4; PDZK1IP1-AS1
    Expression
    Broad expression in kidney (RPKM 1.7), thyroid (RPKM 0.4) and 16 other tissues See more
    NEW
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    Genomic context

    See LINC00853 in Genome Data Viewer
    Location:
    1p33
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (47179250..47180339)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (47056766..47057857)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (47644922..47646011)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene CYP4A22 antisense RNA 1 Neighboring gene cytochrome P450 family 4 subfamily A member 22 Neighboring gene MT-ND1 pseudogene 34 Neighboring gene Sharpr-MPRA regulatory region 13342 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:47644793-47645294 Neighboring gene GATA motif-containing MPRA enhancer 229 Neighboring gene Sharpr-MPRA regulatory region 12212 Neighboring gene PDZK1 interacting protein 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:47657113-47658062 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:47673792-47674378 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:47694003-47694964 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:47694965-47695926 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:47696119-47697092 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:47697093-47698066 Neighboring gene TAL bHLH transcription factor 1, erythroid differentiation factor

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    EBI GWAS Catalog

    Description
    Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles.
    EBI GWAS Catalog

    General gene information

    Other Names

    • PDZK1IP1 antisense RNA 1 (non-protein coding)
    • PDZK1IP1 antisense RNA 1 (tail to tail)
    • noncoding RNA-activating 4

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_047498.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AI651041, AI792909, AL135960
      Related
      ENST00000429328.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      47179250..47180339
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      47056766..47057857
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)