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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001007259.3 → NP_001007260.1 SET domain-containing protein 4 isoform 2
See identical proteins and their annotated locations for NP_001007260.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR and has alternatively spliced 3' terminal exon, which causes a frame-shift compared to variant 1. The resulting shorter isoform (2) has a distinct C-terminus compared to isoform 1.
- Source sequence(s)
-
AP000688, BC002898, BF195582
- Consensus CDS
-
CCDS42923.1
- UniProtKB/Swiss-Prot
-
Q9NVD3
- Related
- ENSP00000382159.2, ENST00000399208.6
- Conserved Domains (2) summary
-
- pfam00856
Location:210 → 273
- SET; SET domain
- cl21457
Location:145 → 272
- TIM_phosphate_binding; TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate ...
-
NM_001007261.3 → NP_001007262.1 SET domain-containing protein 4 isoform 4
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) differs at the 5' and 3' ends, contains an additional exon in the 5' region, and initiates translation from an alternate start codon compared to variant 1. The resulting isoform (4) has a shorter N-terminus and a distinct C-terminus compared to isoform 1.
- Source sequence(s)
-
AB004853, AP000688, BC002898, BF195582
- Consensus CDS
-
CCDS74791.1
- UniProtKB/TrEMBL
-
A8MTS1
- Related
- ENSP00000382156.1, ENST00000399205.5
- Conserved Domains (2) summary
-
- pfam00856
Location:186 → 249
- SET; SET domain
- cl21457
Location:121 → 248
- TIM_phosphate_binding; TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate ...
-
NM_001286752.2 → NP_001273681.1 SET domain-containing protein 4 isoform 3
See identical proteins and their annotated locations for NP_001273681.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs at the 5' and 3' ends, contains an additional exon in the 5' region, and initiates translation from an alternate start codon compared to variant 1. The resulting isoform (3) has a shorter N-terminus compared to isoform 1.
- Source sequence(s)
-
AI636385, AK095215, BC036556, DC394539
- Consensus CDS
-
CCDS74792.1
- UniProtKB/Swiss-Prot
-
Q9NVD3
- Related
- ENSP00000382161.1, ENST00000399212.5
- Conserved Domains (2) summary
-
- pfam00856
Location:186 → 249
- SET; SET domain
- pfam09273
Location:293 → 401
- Rubis-subs-bind; Rubisco LSMT substrate-binding
-
NM_017438.5 → NP_059134.1 SET domain-containing protein 4 isoform 1
See identical proteins and their annotated locations for NP_059134.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (a).
- Source sequence(s)
-
AI636385, AK001660, DC394539
- Consensus CDS
-
CCDS13640.1
- UniProtKB/Swiss-Prot
- B4DT14, D3DSG2, D3DSG4, Q8NE19, Q9BU46, Q9NVD3
- Related
- ENSP00000329189.4, ENST00000332131.9
- Conserved Domains (2) summary
-
- pfam00856
Location:210 → 273
- SET; SET domain
- pfam09273
Location:317 → 425
- Rubis-subs-bind; Rubisco LSMT substrate-binding
RNA
-
NR_040087.3 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) lacks an exon in the mid-region compared to variant 1. It is represented as non-coding because the use of the translational start codon, as used in variant 1, renders this transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AF391112, AI636385, DC394539
- Related
-
ENST00000481477.5
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000021.9 Reference GRCh38.p14 Primary Assembly
- Range
-
36034541..36060526 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011529643.2 → XP_011527945.1 SET domain-containing protein 4 isoform X2
See identical proteins and their annotated locations for XP_011527945.1
- UniProtKB/Swiss-Prot
-
Q9NVD3
- Conserved Domains (2) summary
-
- pfam00856
Location:186 → 249
- SET; SET domain
- pfam09273
Location:293 → 401
- Rubis-subs-bind; Rubisco LSMT substrate-binding
-
XM_047440906.1 → XP_047296862.1 SET domain-containing protein 4 isoform X2
-
XM_011529636.3 → XP_011527938.1 SET domain-containing protein 4 isoform X1
See identical proteins and their annotated locations for XP_011527938.1
- UniProtKB/Swiss-Prot
- B4DT14, D3DSG2, D3DSG4, Q8NE19, Q9BU46, Q9NVD3
- Conserved Domains (2) summary
-
- pfam00856
Location:210 → 273
- SET; SET domain
- pfam09273
Location:317 → 425
- Rubis-subs-bind; Rubisco LSMT substrate-binding
-
XM_047440904.1 → XP_047296860.1 SET domain-containing protein 4 isoform X1
- UniProtKB/Swiss-Prot
- B4DT14, D3DSG2, D3DSG4, Q8NE19, Q9BU46, Q9NVD3
-
XM_011529640.4 → XP_011527942.1 SET domain-containing protein 4 isoform X1
See identical proteins and their annotated locations for XP_011527942.1
- UniProtKB/Swiss-Prot
- B4DT14, D3DSG2, D3DSG4, Q8NE19, Q9BU46, Q9NVD3
- Conserved Domains (2) summary
-
- pfam00856
Location:210 → 273
- SET; SET domain
- pfam09273
Location:317 → 425
- Rubis-subs-bind; Rubisco LSMT substrate-binding
-
XM_047440905.1 → XP_047296861.1 SET domain-containing protein 4 isoform X1
- UniProtKB/Swiss-Prot
- B4DT14, D3DSG2, D3DSG4, Q8NE19, Q9BU46, Q9NVD3
-
XM_011529644.2 → XP_011527946.1 SET domain-containing protein 4 isoform X2
See identical proteins and their annotated locations for XP_011527946.1
- UniProtKB/Swiss-Prot
-
Q9NVD3
- Conserved Domains (2) summary
-
- pfam00856
Location:186 → 249
- SET; SET domain
- pfam09273
Location:293 → 401
- Rubis-subs-bind; Rubisco LSMT substrate-binding
-
XM_047440907.1 → XP_047296863.1 SET domain-containing protein 4 isoform X2
-
XM_011529637.3 → XP_011527939.1 SET domain-containing protein 4 isoform X1
See identical proteins and their annotated locations for XP_011527939.1
- UniProtKB/Swiss-Prot
- B4DT14, D3DSG2, D3DSG4, Q8NE19, Q9BU46, Q9NVD3
- Conserved Domains (2) summary
-
- pfam00856
Location:210 → 273
- SET; SET domain
- pfam09273
Location:317 → 425
- Rubis-subs-bind; Rubisco LSMT substrate-binding
-
XM_011529639.2 → XP_011527941.1 SET domain-containing protein 4 isoform X1
See identical proteins and their annotated locations for XP_011527941.1
- UniProtKB/Swiss-Prot
- B4DT14, D3DSG2, D3DSG4, Q8NE19, Q9BU46, Q9NVD3
- Conserved Domains (2) summary
-
- pfam00856
Location:210 → 273
- SET; SET domain
- pfam09273
Location:317 → 425
- Rubis-subs-bind; Rubisco LSMT substrate-binding
-
XM_011529638.3 → XP_011527940.1 SET domain-containing protein 4 isoform X1
See identical proteins and their annotated locations for XP_011527940.1
- UniProtKB/Swiss-Prot
- B4DT14, D3DSG2, D3DSG4, Q8NE19, Q9BU46, Q9NVD3
- Related
- ENSP00000382163.1, ENST00000399215.5
- Conserved Domains (2) summary
-
- pfam00856
Location:210 → 273
- SET; SET domain
- pfam09273
Location:317 → 425
- Rubis-subs-bind; Rubisco LSMT substrate-binding
-
XM_047440909.1 → XP_047296865.1 SET domain-containing protein 4 isoform X3
-
XM_047440908.1 → XP_047296864.1 SET domain-containing protein 4 isoform X3
-
XM_017028405.3 → XP_016883894.1 SET domain-containing protein 4 isoform X4
- UniProtKB/Swiss-Prot
-
Q9NVD3
- Related
- ENSP00000382158.1, ENST00000399207.5
- Conserved Domains (2) summary
-
- pfam00856
Location:210 → 273
- SET; SET domain
- cl21457
Location:145 → 272
- TIM_phosphate_binding; TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate ...
-
XM_024452122.2 → XP_024307890.1 SET domain-containing protein 4 isoform X5
- UniProtKB/TrEMBL
-
C9JWV5
-
XM_024452121.2 → XP_024307889.1 SET domain-containing protein 4 isoform X5
- UniProtKB/TrEMBL
-
C9JWV5
- Related
- ENSP00000399998.1, ENST00000424303.5
-
XM_047440911.1 → XP_047296867.1 SET domain-containing protein 4 isoform X5
- UniProtKB/TrEMBL
-
C9JWV5
- Related
- ENSP00000396837.1, ENST00000429161.5
-
XM_047440910.1 → XP_047296866.1 SET domain-containing protein 4 isoform X5
- UniProtKB/TrEMBL
-
C9JWV5
RNA
-
XR_007067790.1 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060945.1 Alternate T2T-CHM13v2.0
- Range
-
34417599..34443584 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054324677.1 → XP_054180652.1 SET domain-containing protein 4 isoform X2
-
XM_054324678.1 → XP_054180653.1 SET domain-containing protein 4 isoform X2
-
XM_054324670.1 → XP_054180645.1 SET domain-containing protein 4 isoform X1
- UniProtKB/Swiss-Prot
- B4DT14, D3DSG2, D3DSG4, Q8NE19, Q9BU46, Q9NVD3
-
XM_054324671.1 → XP_054180646.1 SET domain-containing protein 4 isoform X1
- UniProtKB/Swiss-Prot
- B4DT14, D3DSG2, D3DSG4, Q8NE19, Q9BU46, Q9NVD3
-
XM_054324673.1 → XP_054180648.1 SET domain-containing protein 4 isoform X1
- UniProtKB/Swiss-Prot
- B4DT14, D3DSG2, D3DSG4, Q8NE19, Q9BU46, Q9NVD3
-
XM_054324674.1 → XP_054180649.1 SET domain-containing protein 4 isoform X1
- UniProtKB/Swiss-Prot
- B4DT14, D3DSG2, D3DSG4, Q8NE19, Q9BU46, Q9NVD3
-
XM_054324679.1 → XP_054180654.1 SET domain-containing protein 4 isoform X2
-
XM_054324680.1 → XP_054180655.1 SET domain-containing protein 4 isoform X2
-
XM_054324672.1 → XP_054180647.1 SET domain-containing protein 4 isoform X1
- UniProtKB/Swiss-Prot
- B4DT14, D3DSG2, D3DSG4, Q8NE19, Q9BU46, Q9NVD3
-
XM_054324676.1 → XP_054180651.1 SET domain-containing protein 4 isoform X1
- UniProtKB/Swiss-Prot
- B4DT14, D3DSG2, D3DSG4, Q8NE19, Q9BU46, Q9NVD3
-
XM_054324675.1 → XP_054180650.1 SET domain-containing protein 4 isoform X1
- UniProtKB/Swiss-Prot
- B4DT14, D3DSG2, D3DSG4, Q8NE19, Q9BU46, Q9NVD3
-
XM_054324682.1 → XP_054180657.1 SET domain-containing protein 4 isoform X3
-
XM_054324681.1 → XP_054180656.1 SET domain-containing protein 4 isoform X3
-
XM_054324683.1 → XP_054180658.1 SET domain-containing protein 4 isoform X4
-
XM_054324685.1 → XP_054180660.1 SET domain-containing protein 4 isoform X5
- UniProtKB/TrEMBL
-
C9JWV5
-
XM_054324684.1 → XP_054180659.1 SET domain-containing protein 4 isoform X5
- UniProtKB/TrEMBL
-
C9JWV5
-
XM_054324687.1 → XP_054180662.1 SET domain-containing protein 4 isoform X5
- UniProtKB/TrEMBL
-
C9JWV5
-
XM_054324686.1 → XP_054180661.1 SET domain-containing protein 4 isoform X5
- UniProtKB/TrEMBL
-
C9JWV5
RNA
-
XR_008485339.1 RNA Sequence
-
XR_008485340.1 RNA Sequence
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_001007258.1: Suppressed sequence
- Description
- NM_001007258.1: This RefSeq was permanently suppressed because it contains the wrong CDS. If the correct CDS was annotated, it would be a nonsense-mediated mRNA decay (NMD) candidate.
-
NM_001007260.1: Suppressed sequence
- Description
- NM_001007260.1: This RefSeq was permanently suppressed because it contains the wrong CDS. If the correct CDS was annotated, it would be a nonsense-mediated mRNA decay (NMD) candidate.
-
NM_001007262.1: Suppressed sequence
- Description
- NM_001007262.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.