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    Cdpf1 cysteine rich, DPF motif domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 72355, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Cdpf1provided by MGI
    Official Full Name
    cysteine rich, DPF motif domain containing 1provided by MGI
    Primary source
    MGI:MGI:1919605
    See related
    Ensembl:ENSMUSG00000064284 AllianceGenome:MGI:1919605
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2210021J22Rik
    Summary
    Orthologous to human CDPF1 (cysteine rich DPF motif domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in testis adult (RPKM 10.4), colon adult (RPKM 9.4) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Cdpf1 in Genome Data Viewer
    Location:
    15 E2; 15 40.42 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (85691173..85695898, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (85806972..85811697, complement)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 46529 Neighboring gene STARR-positive B cell enhancer ABC_E10873 Neighboring gene peroxisome proliferator activated receptor alpha Neighboring gene STARR-seq mESC enhancer starr_39399 Neighboring gene STARR-positive B cell enhancer ABC_E5505 Neighboring gene polycystin (PKD) family receptor for egg jelly Neighboring gene tetratricopeptide repeat domain 38

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Assembly, verification, and initial annotation of the NIA mouse 7.4K cDNA clone set. VanBuren V, et al. Genome Res, 2002 Dec. PMID 12466305, Free PMC Article
    2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    5. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    cysteine-rich DPF motif domain-containing protein 1
    Names
    UPF0595 protein C22orf40 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001164625.1 → NP_001158097.1  cysteine-rich DPF motif domain-containing protein 1

      See identical proteins and their annotated locations for NP_001158097.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AC117784, AI849737, AK008763, BQ550379
      Consensus CDS
      CCDS27722.1
      UniProtKB/Swiss-Prot
      E9PUA4, Q8R3A2
      Related
      ENSMUSP00000121889.2, ENSMUST00000134631.8
      Conserved Domains (1) summary
      pfam10170
      Location:13 → 106
      C6_DPF; Cysteine-rich domain

    2. NM_001164626.1 → NP_001158098.1  cysteine-rich DPF motif domain-containing protein 1

      See identical proteins and their annotated locations for NP_001158098.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR, compared to variant 1. Variants 1, 2, and 3, encode the same protein.
      Source sequence(s)
      AC117784, AI849737, AK008763, BY081241
      Consensus CDS
      CCDS27722.1
      UniProtKB/Swiss-Prot
      E9PUA4, Q8R3A2
      Related
      ENSMUSP00000123174.2, ENSMUST00000150995.8
      Conserved Domains (1) summary
      pfam10170
      Location:13 → 106
      C6_DPF; Cysteine-rich domain

    3. NM_197998.2 → NP_932115.2  cysteine-rich DPF motif domain-containing protein 1

      See identical proteins and their annotated locations for NP_932115.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1, 2, and 3, encode the same protein.
      Source sequence(s)
      AC117784, AI849737, AK008763, BY081241
      Consensus CDS
      CCDS27722.1
      UniProtKB/Swiss-Prot
      E9PUA4, Q8R3A2
      Related
      ENSMUSP00000071772.7, ENSMUST00000071876.13
      Conserved Domains (1) summary
      pfam10170
      Location:13 → 106
      C6_DPF; Cysteine-rich domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      85691173..85695898 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006521447.2 → XP_006521510.1  cysteine-rich DPF motif domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006521510.1

      UniProtKB/Swiss-Prot
      E9PUA4, Q8R3A2
      Related
      ENSMUSP00000119728.2, ENSMUST00000144067.8
      Conserved Domains (1) summary
      pfam10170
      Location:13 → 106
      C6_DPF; Cysteine-rich domain

    2. XM_006521448.3 → XP_006521511.1  cysteine-rich DPF motif domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006521511.1

      UniProtKB/Swiss-Prot
      E9PUA4, Q8R3A2
      Conserved Domains (1) summary
      pfam10170
      Location:13 → 106
      C6_DPF; Cysteine-rich domain
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8R3A2.2 GenPept UniProtKB/Swiss-Prot:Q8R3A2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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