sltm SAFB-like, transcription modulator [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: sltmprovided by ZNC
Official Full Name: SAFB-like, transcription modulatorprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-2647
See related: Ensembl:ENSDARG00000052728 AllianceGenome:ZFIN:ZDB-GENE-040426-2647
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:65985; wu:fd12b08
Summary: Predicted to enable sequence-specific DNA binding activity. Predicted to be involved in regulation of mRNA processing and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human SLTM (SAFB like transcription modulator). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 7

Exon count:: 20

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	7	NC_007118.7 (30538206..30560450, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	7	NC_007118.6 (30267056..30289300, complement)

Chromosome 7 - NC_007118.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fb18c07.x1 (e-PCR)
- UniSTS:203008

fd04a03.y1 (e-PCR)
- UniSTS:194901

fd12b08.x1 (e-PCR)
- UniSTS:204124

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info
enables sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in regulation of mRNA processing	IBA Inferred from Biological aspect of Ancestor more info
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: SAFB-like transcription modulator

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_213333.2 → NP_998498.2 SAFB-like transcription modulator

Status: VALIDATED

Source sequence(s)

AL935053

UniProtKB/TrEMBL

A0A8M1PF00, F1Q6F9

Related

ENSDARP00000115812.1, ENSDART00000142818.4

Conserved Domains (2) summary

smart00513
Location:13 → 47

SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation

cd12678
Location:322 → 395

RRM_SLTM; RNA recognition motif in Scaffold attachment factor (SAF)-like transcription modulator (SLTM) and similar proteins