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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001195215.2 → NP_001182144.1 DENN domain-containing protein 1B isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) represents the longest transcript and encodes the longest isoform (3).
- Source sequence(s)
-
AI692985, AK093982, AL139136, BC074735, BK006960, BP220095, DA495773
- Consensus CDS
-
CCDS72997.1
- UniProtKB/Swiss-Prot
- B5MD89, D3PFD5, Q5T3B8, Q5T3B9, Q5T3C1, Q5TAI8, Q6B0I8, Q6P3S1, Q8NDT1, Q8TBE6, Q9H774, Q9NXU2
- Related
- ENSP00000479816.1, ENST00000620048.6
- Conserved Domains (3) summary
-
- smart00801
Location:323 → 388
- dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
- smart00799
Location:94 → 291
- DENN; Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN
- smart00800
Location:9 → 89
- uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
-
NM_001195216.2 → NP_001182145.1 DENN domain-containing protein 1B isoform 4
See identical proteins and their annotated locations for NP_001182145.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) differs in the 3' coding region and 3' UTR, compared to variant 3. The resulting isoform (4) has a distinct C-terminus and is shorter than isoform 3.
- Source sequence(s)
-
BC063456, DA495773
- UniProtKB/Swiss-Prot
-
Q6P3S1
- Related
-
ENST00000468589.5
-
NM_001300858.2 → NP_001287787.1 DENN domain-containing protein 1B isoform 5
See identical proteins and their annotated locations for NP_001287787.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) contains multiple differences at the 5' and 3' ends, compared to variant 3, including initiation of translation at an alternate start codon. The resulting isoform (5) has distinct N- and C-termini and is shorter than isoform 3.
- Source sequence(s)
-
AL139136, BC022561, BC063877, DA495773
- Consensus CDS
-
CCDS72996.1
- UniProtKB/Swiss-Prot
-
Q6P3S1
- Related
- ENSP00000235453.4, ENST00000235453.8
- Conserved Domains (3) summary
-
- smart00801
Location:293 → 358
- dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
- smart00799
Location:84 → 261
- DENN; Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN
- smart00800
Location:11 → 79
- uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
-
NM_144977.5 → NP_659414.2 DENN domain-containing protein 1B isoform 2
See identical proteins and their annotated locations for NP_659414.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 3' coding region and 3' UTR, compared to variant 3. The resulting isoform (2) has a distinct C-terminus and is shorter than isoform 3.
- Source sequence(s)
-
AL139136, BC063877, DA495773
- Consensus CDS
-
CCDS41452.2
- UniProtKB/Swiss-Prot
-
Q6P3S1
- Related
- ENSP00000356366.3, ENST00000367396.7
- Conserved Domains (3) summary
-
- smart00801
Location:323 → 388
- dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
- smart00799
Location:94 → 291
- DENN; Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN
- smart00800
Location:9 → 89
- uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
RNA
-
NR_125340.2 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) lacks three alternate internal exons, compared to variant 3. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 3, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AI692985, AK091207, AK093982, AL139136, BC074735, BK006960, DA495773
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000001.11 Reference GRCh38.p14 Primary Assembly
- Range
-
197504748..197782150 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011509248.3 → XP_011507550.1 DENN domain-containing protein 1B isoform X2
- Conserved Domains (3) summary
-
- smart00801
Location:336 → 401
- dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
- smart00799
Location:107 → 304
- DENN; Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN
- smart00800
Location:22 → 102
- uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
-
XM_047447711.1 → XP_047303667.1 DENN domain-containing protein 1B isoform X7
-
XM_005244931.3 → XP_005244988.1 DENN domain-containing protein 1B isoform X5
See identical proteins and their annotated locations for XP_005244988.1
- Conserved Domains (3) summary
-
- smart00801
Location:303 → 368
- dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
- smart00799
Location:94 → 271
- DENN; Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN
- smart00800
Location:9 → 89
- uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
-
XM_024453626.2 → XP_024309394.1 DENN domain-containing protein 1B isoform X7
- Conserved Domains (2) summary
-
- smart00801
Location:122 → 187
- dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
- smart00799
Location:1 → 90
- DENN; Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN
-
XM_011509249.3 → XP_011507551.1 DENN domain-containing protein 1B isoform X4
See identical proteins and their annotated locations for XP_011507551.1
- Conserved Domains (3) summary
-
- smart00801
Location:313 → 378
- dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
- smart00799
Location:84 → 281
- DENN; Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN
- smart00800
Location:11 → 79
- uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
-
XM_011509247.2 → XP_011507549.1 DENN domain-containing protein 1B isoform X3
- Conserved Domains (3) summary
-
- smart00801
Location:351 → 416
- dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
- smart00799
Location:142 → 319
- DENN; Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN
- smart00800
Location:57 → 137
- uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
-
XM_011509246.3 → XP_011507548.1 DENN domain-containing protein 1B isoform X1
- Conserved Domains (3) summary
-
- smart00801
Location:371 → 436
- dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
- smart00799
Location:142 → 339
- DENN; Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN
- smart00800
Location:57 → 137
- uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
-
XM_047447700.1 → XP_047303656.1 DENN domain-containing protein 1B isoform X6
-
XM_047447715.1 → XP_047303671.1 DENN domain-containing protein 1B isoform X8
-
XM_006711194.4 → XP_006711257.1 DENN domain-containing protein 1B isoform X9
- Conserved Domains (1) summary
-
- smart00801
Location:17 → 82
- dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
-
XM_047447731.1 → XP_047303687.1 DENN domain-containing protein 1B isoform X13
- UniProtKB/TrEMBL
-
B3KR95
- Related
- ENSP00000294737.7, ENST00000294737.11
-
XM_047447730.1 → XP_047303686.1 DENN domain-containing protein 1B isoform X12
- UniProtKB/TrEMBL
-
B3KR95
-
XM_011509251.4 → XP_011507553.1 DENN domain-containing protein 1B isoform X10
- Conserved Domains (3) summary
-
- smart00801
Location:371 → 434
- dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
- smart00799
Location:142 → 339
- DENN; Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN
- smart00800
Location:57 → 137
- uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
-
XM_047447726.1 → XP_047303682.1 DENN domain-containing protein 1B isoform X11
Alternate T2T-CHM13v2.0
Genomic
-
NC_060925.1 Alternate T2T-CHM13v2.0
- Range
-
196766532..197041541 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054334715.1 → XP_054190690.1 DENN domain-containing protein 1B isoform X2
-
XM_054334721.1 → XP_054190696.1 DENN domain-containing protein 1B isoform X7
-
XM_054334718.1 → XP_054190693.1 DENN domain-containing protein 1B isoform X5
-
XM_054334716.1 → XP_054190691.1 DENN domain-containing protein 1B isoform X3
-
XM_054334714.1 → XP_054190689.1 DENN domain-containing protein 1B isoform X1
-
XM_054334720.1 → XP_054190695.1 DENN domain-containing protein 1B isoform X7
-
XM_054334717.1 → XP_054190692.1 DENN domain-containing protein 1B isoform X4
-
XM_054334719.1 → XP_054190694.1 DENN domain-containing protein 1B isoform X6
-
XM_054334722.1 → XP_054190697.1 DENN domain-containing protein 1B isoform X8
-
XM_054334723.1 → XP_054190698.1 DENN domain-containing protein 1B isoform X9
-
XM_054334727.1 → XP_054190702.1 DENN domain-containing protein 1B isoform X13
- UniProtKB/TrEMBL
-
B3KR95
-
XM_054334726.1 → XP_054190701.1 DENN domain-containing protein 1B isoform X12
- UniProtKB/TrEMBL
-
B3KR95
-
XM_054334724.1 → XP_054190699.1 DENN domain-containing protein 1B isoform X10
-
XM_054334725.1 → XP_054190700.1 DENN domain-containing protein 1B isoform X11
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_001142795.1: Suppressed sequence
- Description
- NM_001142795.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
-
NM_019049.1: Suppressed sequence
- Description
- NM_019049.1: This RefSeq was suppressed because the CDS was partial.