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    LINC02961 long intergenic non-protein coding RNA 2961 [ Homo sapiens (human) ]

    Gene ID: 100130249, updated on 28-Oct-2024

    Summary

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    Official Symbol
    LINC02961provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2961provided by HGNC
    Primary source
    HGNC:HGNC:55986
    See related
    Ensembl:ENSG00000279261 AllianceGenome:HGNC:55986
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    PP2672
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    Genomic context

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    See LINC02961 in Genome Data Viewer
    Location:
    1q42.3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (234757619..234760056, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (234148377..234150830, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (234893366..234895803, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234860133-234860695 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234860696-234861259 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234861823-234862386 Neighboring gene Sharpr-MPRA regulatory region 12432 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2765 Neighboring gene long intergenic non-protein coding RNA 1132 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:234869880-234870380 Neighboring gene uncharacterized LOC105373210 Neighboring gene uncharacterized LOC107985364 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234896325-234896904 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234896905-234897482 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:234907153-234908352 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2768 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2769 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234912515-234913091 Neighboring gene uncharacterized LOC124904557 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:234915140-234915338 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234915801-234916406 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234916407-234917010 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234920999-234921744 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234941970-234942552 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234942553-234943136 Neighboring gene uncharacterized LOC107985365 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:234951823-234952324 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:234952325-234952824 Neighboring gene RNY4 pseudogene 16

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_148962.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AF193050, AL360294
      Related
      ENST00000640945.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      234757619..234760056 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      234148377..234150830 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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