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    Pwwp4b PWWP domain containing 4B [ Mus musculus (house mouse) ]

    Gene ID: 574405, updated on 9-Aug-2024

    Summary

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    Official Symbol
    Pwwp4bprovided by MGI
    Official Full Name
    PWWP domain containing 4Bprovided by MGI
    Primary source
    MGI:MGI:99870
    See related
    Ensembl:ENSMUSG00000071745 AllianceGenome:MGI:99870
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    DXBay18
    Summary
    Is expressed in heart. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in placenta adult (RPKM 7.0), testis adult (RPKM 1.3) and 2 other tissues See more
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    Genomic context

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    See Pwwp4b in Genome Data Viewer
    Location:
    X A7.3; X 37.29 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (72180829..72193071, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (73137223..73149466, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene X-linked lymphocyte-regulated 3A Neighboring gene X-linked lymphocyte-regulated 5A Neighboring gene PWWP domain containing 4A Neighboring gene X-linked lymphocyte-regulated 5B Neighboring gene STARR-seq mESC enhancer starr_47342 Neighboring gene STARR-seq mESC enhancer starr_47343 Neighboring gene STARR-seq mESC enhancer starr_47344 Neighboring gene spindlin family, member 2D Neighboring gene X-linked lymphocyte-regulated 3B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A comparative transcription map of the murine bare patches (Bpa) and striated (Str) critical regions and human Xq28. Levin ML, et al. Genome Res, 1996 Jun. PMID 8828036
    2. A 2.3-Mb yeast artificial chromosome contig spanning from Gabra3 to G6pd on the mouse X chromosome. Chatterjee A, et al. Genomics, 1994 May 1. PMID 8088815
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC574405

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001025384.3 → NP_001020555.2  uncharacterized protein LOC574405

      See identical proteins and their annotated locations for NP_001020555.2

      Status: VALIDATED

      Source sequence(s)
      BX813330
      Consensus CDS
      CCDS53094.1
      UniProtKB/TrEMBL
      Q52KH6
      Related
      ENSMUSP00000079200.4, ENSMUST00000080324.4
      Conserved Domains (1) summary
      cd06080
      Location:380 → 459
      MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      72180829..72193071 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006528193.4 → XP_006528256.1  uncharacterized protein LOC574405 isoform X1

      See identical proteins and their annotated locations for XP_006528256.1

      UniProtKB/TrEMBL
      Q52KH6
      Conserved Domains (1) summary
      cd06080
      Location:380 → 459
      MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...

    2. XM_006528197.4 → XP_006528260.1  uncharacterized protein LOC574405 isoform X1

      See identical proteins and their annotated locations for XP_006528260.1

      UniProtKB/TrEMBL
      Q52KH6
      Conserved Domains (1) summary
      cd06080
      Location:380 → 459
      MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...

    3. XM_006528199.3 → XP_006528262.1  uncharacterized protein LOC574405 isoform X1

      See identical proteins and their annotated locations for XP_006528262.1

      UniProtKB/TrEMBL
      Q52KH6
      Conserved Domains (1) summary
      cd06080
      Location:380 → 459
      MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...

    4. XM_006528196.3 → XP_006528259.1  uncharacterized protein LOC574405 isoform X1

      See identical proteins and their annotated locations for XP_006528259.1

      UniProtKB/TrEMBL
      Q52KH6
      Conserved Domains (1) summary
      cd06080
      Location:380 → 459
      MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...

    5. XM_006528192.2 → XP_006528255.1  uncharacterized protein LOC574405 isoform X1

      See identical proteins and their annotated locations for XP_006528255.1

      UniProtKB/TrEMBL
      Q52KH6
      Conserved Domains (1) summary
      cd06080
      Location:380 → 459
      MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...

    6. XM_006528200.1 → XP_006528263.1  uncharacterized protein LOC574405 isoform X1

      See identical proteins and their annotated locations for XP_006528263.1

      UniProtKB/TrEMBL
      Q52KH6
      Conserved Domains (1) summary
      cd06080
      Location:380 → 459
      MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...

    7. XM_006528194.1 → XP_006528257.1  uncharacterized protein LOC574405 isoform X1

      See identical proteins and their annotated locations for XP_006528257.1

      UniProtKB/TrEMBL
      Q52KH6
      Conserved Domains (1) summary
      cd06080
      Location:380 → 459
      MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...

    8. XM_006528195.1 → XP_006528258.1  uncharacterized protein LOC574405 isoform X1

      See identical proteins and their annotated locations for XP_006528258.1

      UniProtKB/TrEMBL
      Q52KH6
      Conserved Domains (1) summary
      cd06080
      Location:380 → 459
      MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...

    9. XM_006528198.4 → XP_006528261.1  uncharacterized protein LOC574405 isoform X1

      See identical proteins and their annotated locations for XP_006528261.1

      UniProtKB/TrEMBL
      Q52KH6
      Conserved Domains (1) summary
      cd06080
      Location:380 → 459
      MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...
    Nucleotide Protein Strain
    Heading Accession and Version

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