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    LOC105374690 uncharacterized LOC105374690 [ Homo sapiens (human) ]

    Gene ID: 105374690, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC105374690
    Gene description
    uncharacterized LOC105374690
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC105374690 in Genome Data Viewer
    Location:
    2p16.1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (55945824..56177557)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (55942709..56174523)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985811 Neighboring gene uncharacterized LOC112268416 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:56063682-56064458 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:56064459-56065235 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:56150477-56150976 Neighboring gene EGF containing fibulin extracellular matrix protein 1 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:56178767-56179966 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15788 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15789 Neighboring gene RN7SK pseudogene 208 Neighboring gene MIR217 host gene Neighboring gene microRNA 216a Neighboring gene microRNA 217 Neighboring gene microRNA 216b Neighboring gene long intergenic non-protein coding RNA 1813 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:56346884-56347414 Neighboring gene uncharacterized LOC100129434 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11502 Neighboring gene coiled-coil domain containing 85A Neighboring gene RNA, 5S ribosomal pseudogene 93 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:56514747-56515946 Neighboring gene uncharacterized LOC101927213

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      55945824..56177557
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_940109.3 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      55942709..56174523
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007072088.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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